barSeed - Barley Seed Development Database

Probe CUST_1868_PI390587928

Source Contig U35_2798

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1868_PI390587928	Hv_44K_v2	AATGGATTCAGGGACACCTGATCACACAAAATGGATAGGCTCTTTCAGCAGCAAGCAAGA	318	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371335	992	2e-24	337 - 396	100	60 / 60	plus	ABC15801
MLOC	AK251007.1	876	2e-24	322 - 381	100	60 / 60	plus	ABC15801
MLOC	MLOC_6472.1	1219	2e-24	350 - 409	100	60 / 60	plus	ABC15801
MLOC	MLOC_6473.2	2541	2e-24	350 - 409	100	60 / 60	plus	ABC13674 ABC15801
MLOC	MLOC_6473.3	2642	2e-24	350 - 409	100	60 / 60	plus	ABC13674 ABC15801
JLOC1	JLOC1_4226.2	1050	8e-25	321 - 380	100	60 / 60	plus
JLOC1	JLOC1_4226.1	2533	8e-25	321 - 380	100	60 / 60	plus
Harvest21	ABC15801	905	3e-25	319 - 378	100	60 / 60	plus	ABC15801
Harvest35	U35_2798	905	3e-25	319 - 378	100	60 / 60	plus

Contig Sequence (905 bp)

>U35_2798 905 Hv_44K_v2
GGGTTGCAGCAGTCCGGCGAGGGGAGAGAGGGGCGAGATGGGGTCGGTGGTGCTGCCGAC
GCTGCGGCGGAAGCGGGAGGTCGACGCCGCCATCCGCGACACGCTCGACAAGGTCCTTGT
CCTCCGATTCGGCCGCGCCTCCGACGCCGCCTGCCTCCAGCTCGACGACGTCCTCGCAAA
ATCTTCTTGGGACATATCCAAATTTGCAACGGTAGCATTGGTTGACATGGATTCTGAGGA
GATTCAAGTGTATGTTGACTATTTTGATATCACGTTGGTCCCAGCAACCATTTTTTTCTT
CAATGCTCATCACATGAAAATGGATTCAGGGACACCTGATCACACAAAATGGATAGGCTC
TTTCAGCAGCAAGCAAGACTTCATTGATGTAGTTGAGGCAGTATTCAGGGGCGCGATGAA
AGGCAAACTGATAGTGTCTTGCCCACTTCCACCAGAGAGGATACCCAGATTCCAACTCCT
TTTCAAGGATGTCTAATGACAAGAAGCACACATTCTCAACATATGTATTGGTCTTTTAGA
TAATGGAAGAGTTTCATTCCCCCATCCTCTGCACACATATCCATGCTGCCAGACCTAAAG
AATAAGATGTTCATGGAGGATATGGAGATGTGCTTGGATGAGCTTGGTGATGAACAGTCA
AGAGTTAGCATTTGCACTGGTTTGCATCAACTCTGTTTCTCTATGTTATAGCATAATACA
GCAATTGGTGTTTTGCCCTCTCTAGTCTGTAGATTTCTGTATTTCAAAAACTAGAATGGT
CAATTAGGTGCTTATCTGTTACTTTAGTTTGGTGCAAGCCTGGTTATATGTAGTAAGACT
AGTTGGTGTTTTGAAGTGATGCAATCAGTTATCAAAATTTACATGTGCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_2798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g19220.1	153	2e-97	protein\|mitosis protein dim1, putative, expressed
Brachypodium v1_2	Bradi4g20250.1	153	6e-102
Arabidopsis v10	AT3G24730.1	159	5e-77	mRNA splicing factor, thioredoxin-like U5 snRNP \| chr3:9030152-9030894 REVERSE LENGTH=159