barSeed - Barley Seed Development Database

Probe CUST_18689_PI390587928

Source Contig U35_13634

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18689_PI390587928	Hv_44K_v2	CTTGTATTAACAGTACAACTAGTTTGTGATTGCCCTCGAGTAATCTCAAGCCGTTGCAGA	424	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.495	1.701	1.193	0.787	0.329	0.362
Raw	2828.487	5008.580	3097.207	3248.623	471.936	563.179

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53145.1	1431	2e-24	37 - 96	100	60 / 60	minus	ABC25967 ABC26118
JLOC1	JLOC1_34114.1	1491	8e-25	1335 - 1394	100	60 / 60	plus
Harvest21	ABC26118	510	3e-25	425 - 484	100	60 / 60	plus	ABC26118
Harvest21	ABC25967	640	3e-25	524 - 583	100	60 / 60	plus	ABC25967
Harvest35	U35_21931	655	3e-25	525 - 584	100	60 / 60	plus
Harvest35	U35_13634	510	3e-25	425 - 484	100	60 / 60	plus

Contig Sequence (510 bp)

>U35_13634 510 Hv_44K_v2
GCACGAGGCTTCCAGCAACCCCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAACAACAACAGCAGCAGCAGCAGCAACAGGCCGCGGCGACGGCGCAGCCTCAG
CAGCAGCAGCAGCAGCAGCAGCAGCTGATGCTGTATACAAAGGAGGGGAAGCCCGAGGCC
GGCGCTAGACGTAACTTGATCGGCCGTGAAATGCGGGCGGGGCCGCCTCTTGTATCTCCT
GTCTACTGAGAACAAAAAACTTGTAATTAATTTTCCAGGCAATTCTAGGAGAGCTATATA
TCTTGTCAAGTGCTTGGTACCAGATTCATTTATCTAAGGCTTGTTGTTAGCTTCGTTCCG
GCTGTGGACCTCCTCAGTGATAACAGAGCTCAGCATTCCTATTTTTAGGGGCAACGGTTG
TAAACTTGTATTAACAGTACAACTAGTTTGTGATTGCCCTCGAGTAATCTCAAGCCGTTG
CAGAACCTTATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13634 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None