barSeed - Barley Seed Development Database

Probe CUST_18682_PI390587928

Source Contig U35_25611

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18682_PI390587928	Hv_44K_v2	ATGTACTACCTTGGATGATACTGTTGTGGATGCAAAGTATGATCTCCTCGTACCAAAAAA	689	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.891	2.832	1.079	0.747	0.275	0.276
Raw	682.757	1054.964	346.172	373.166	49.613	54.513

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361990	1850	9e-22	1753 - 1807	100	55 / 55	plus	ABC22334
JLOC1	JLOC1_49264.1	1646	5e-22	1257 - 1311	100	55 / 55	plus
Harvest21	ABC22334	760	3e-25	12 - 71	100	60 / 60	minus	ABC22334
Harvest35	U35_25611	760	3e-25	690 - 749	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_25611 760 Hv_44K_v2
GCACGAGGCACATCTCCAACATTAGTCAAGGCCGTGTCTTGTCAGTAAGTGACATCCTAA
AAGTAGATGATGAGCTGAAAGTTCTGGTGATCAAGTCAAATGTTTCTGACAAAATTGCAC
TCAGCATAGCAGACCTGGAAAGTGCTCCTGGTTTATTTCTGTCAGATAAAGAGAAGGTGT
TTTCAGAAGCTGAGGAAATGTCAAAGAGGTACCGGGAGCAACTTCCAGTTGTCTCTCGGA
ACACTAAATTAGATTATGACCTTCCAGGGGGGACTATTCCGTTTGATAATGAAGCGATGC
TTTATGCAAACTGGAAATGGTTCAAATTTCTGAGGCATGCCAAATTTGCTGACGAAAATG
AGTAGAACATAGTTGCAGCTGATGTTTATTTCATGCACTGGATATTGTAAGGAGAATTTG
GTCCCTGTCGAACAAGAGAATGCATGCAAGCAAGCTACTGTAGTTGCAAACATATCAAGT
GGGACCTTCATTGGACGACCTAAATTGAAACAGTATTAACGGCTCTTACTGAGTGGACCG
CGTGCAGTACAGTACCTGCCATAACCAAGCAAGATCAAGTTTTCTGAGCAGGAACGGACG
GCTTCAGTCGATGAAGGTCACAACAAGCATTAGTTTGCTGACAACAAAAGAGACTTTCTG
GTCACGTTAATATTCATGGCAAAATTCTGATGTACTACCTTGGATGATACTGTTGTGGAT
GCAAAGTATGATCTCCTCGTACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_25611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g40640.3	235	5e-56	protein\|S1 RNA binding domain containing protein, expressed
Brachypodium v1_2	Bradi2g42220.1	428	6e-63
Arabidopsis v10	None