barSeed - Barley Seed Development Database

Probe CUST_1867_PI390587928

Source Contig U35_2799

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1867_PI390587928	Hv_44K_v2	CTCTTGTACTCTGGTGTGGCCTAGAGGTCTGAAGCATGTCTTTCAATACAAAAGGCCTTT	967	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.705	0.763	0.930	1.526	0.992	1.497
Raw	3420.277	5747.280	6234.473	15715.150	3694.167	5951.560

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_50973.3	1525	2e-24	1037 - 1096	100	60 / 60	plus	ABC06966 ABC48391
JLOC1	JLOC1_32525.1	1076	8e-25	966 - 1025	100	60 / 60	plus
Harvest21	ABC06966	1038	3e-25	949 - 1008	100	60 / 60	plus	ABC06966
Harvest21	ABC48391	210	2e-21	25 - 83	97	57 / 59	minus	ABC48391
Harvest35	U35_2799	1090	3e-25	968 - 1027	100	60 / 60	plus

Contig Sequence (1090 bp)

>U35_2799 1090 Hv_44K_v2
CTCGACTGTGCCAAGCACTTCTGACCGTCTCGAGTTCCGCCTCACCTCACCTCCCCGATC
CCTCTTTCTCCTTGGGTAGAGCCAGGGCGCGACCGCGCGAAGGAAGCAACGAAAGCCCAA
AGCTGGCGCATCCTTAGCACCCAAGGGAAGAAGAAAGAGGCGACAGAGCGAGGCGTCCCG
GAGGCAGAGCCAAGGATCCATGGATCGGCCCCAGGTGGTCAGCGAGAACTATGCCAATCC
TATAACATGCCTCTTCCATGTGCTCTTCAAGGCGTCGGCGCTGGCGTTCTACATCCTCTT
CTCGCTCTTCGTGAAGAGCTTCGTCATCATCTTTGTCATCACCGTGCTCCTTGCCGCGCT
TGACTTCTGGGTGGTGAAGAATGTCAGCGGAAGGATACTGGTCGGGCTTCGTTGGTGGAA
TGAGATTGACGACGATGGTAACAGTGTGTGGAAGTTCGAGTGCCTCGACGGGGAGTCTCT
CGCTCGGATGAACAAAAAAGACTCATGGCTGTTCTGGTGGACTCTTTACTTGAACGCTGC
TGCATGGATCATTCTTGCGATATTTTCACTCATTAGACTTGAAGCTGATTACCTTCTTGT
TGTTGGAGTTTGCTTGACTCTAAGCCTTGCAAACATCGTGGGGTTCACCAAATGCAACAA
AGATGCCAAGAAGAACATCCGAGCTTTTGCTGAAAATGCCGCTCAAAACGCCATCACATC
CCGCATCACATCATCCCTGCAGTCAGCATTCGGCATCTGAAGTCCAGATTACACAGAGGC
CCAAAATTACATACAACTGTGTTACCTTCTGTCAAAGATCAGCTTGTGATATCCTGTTTT
CATGTGATTTTGGCTTATATACAAGTAGGTCGATTTTGATTGGAGTGACAATGATGGAAA
ACAGCGTACTAATTAGCCCTAGGTAAGTTTACACTTTCTCCTGTACTAAAGAGCATACTT
TCTTCTTCTCTTGTACTCTGGTGTGGCCTAGAGGTCTGAAGCATGTCTTTCAATACAAAA
GGCCTTTTTTTTAATCTATTATGAAGATATGCTGATGTCGTTGTTCCCAANNNAAAAAAA
AAAAAAAAAA

Homology of Contig U35_2799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g06700.2	188	1e-119	protein\|expressed protein
Brachypodium v1_2	Bradi2g34810.2	188	5e-126
Arabidopsis v10	AT1G09330.1	186	7e-92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). \| chr1:3013003-3014903 REVERSE LENGTH=186