barSeed - Barley Seed Development Database

Probe CUST_18676_PI390587928

Source Contig U35_25618

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18676_PI390587928	Hv_44K_v2	TCACCCTTGCAAGTTACCGATGTACTCTTGACTAGTGTTGTTTTTTCTATGTTATACAAA	544	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.932	2.728	1.293	0.566	0.151	0.192
Raw	1140.565	1730.237	691.328	498.341	44.971	62.643

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371337	2986	2e-24	2879 - 2938	100	60 / 60	plus	None
MLOC	MLOC_15602.2	2154	2e-24	1117 - 1176	100	60 / 60	plus	None
MLOC	MLOC_15602.1	1474	2e-24	842 - 901	100	60 / 60	plus	None
JLOC1	JLOC1_10712.1	1434	8e-25	1212 - 1271	100	60 / 60	plus
Harvest21	ABC51271	625	3e-25	545 - 604	100	60 / 60	plus
Harvest35	U35_25618	635	3e-25	545 - 604	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_25618 635 Hv_44K_v2
TTTGGTAGCGATTTTGCGATGATACAGCAACTATTCCCAGATAAGTCCCGTGACCAAGTA
CGCCAAAAGTTTAAAAGTGAGGACAAAAAGCATCCAAGGCAAGTTGACGATGCTATACTT
CATCGCTCAAGAGATAATCTGTATTTAAAACAAGTAATGAAACAGCTCAACGTTGAAGAT
TCGCTGAAAGACGTCAACATTACACAAAAACAAGAGGTTGCATCAAGTGAAGCGAACACT
GGAAAGGAGGTTTTTCCTGAAACTAACACGTACAGTGTTGAGAATTGTTCAACTTTATCA
GATGAAGAGATGGGCACGCACCAATCTGAGGTCAAAGAAGGGGAGGATTTTTCTGGAAAT
GCTGATGATGATGACCTGGATGTTTTTGATTGGTACTAGCACGCTAGCCACACTGAAAAT
CAGGCAAAAATTATTTAGGATCTCACAGTTCTATGTCAAACGTTTTTGCTCATGGGATTA
GTGAGTTAGTTATGCGATATACGGATGCAGTTAGTACGGTTATTACGTTGATTACTAGTT
TATTTCACCCTTGCAAGTTACCGATGTACTCTTGACTAGTGTTGTTTTTTCTATGTTATA
CAAACTTTGTAAACCCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_25618 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None