barSeed - Barley Seed Development Database

Probe CUST_18672_PI390587928

Source Contig U35_13642

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18672_PI390587928	Hv_44K_v2	GAGACGTCCTTTTCCATATCTGTAAAACTTTTGGAATTATCTGTAGCGAAAAATATCTGC	1384	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366613	1496	2e-24	1398 - 1457	100	60 / 60	plus	ABC10854
Harvest21	ABC50538	692	1e-24	40 - 98	100	59 / 59	minus
Harvest35	U35_13642	2023	3e-25	1385 - 1444	100	60 / 60	plus

Contig Sequence (2023 bp)

>U35_13642 2023 Hv_44K_v2
GACGAAGCCGACGAAAGTAAGCAACGCCGCCGACCCCTCGAGTAGGGGTGAAACAAGACA
AAGAGAGAGTAATGTGGCGTCGCTGCATTTGCTGTCAAGCCGCTGAGTTTGATGAGAATG
AAAATGGGCGTGCCAAGTCCAAGGCCAAGGCCCCAACAAATAACGTAGATGGAATGAAAA
AGGGTTTGAAAGATTCAGCTACTGTGAAAGCAGAGCCACAAGATTCAGCTCCCTCTATCA
ATATTCCTGTTCTATCTTTGGATGAATTAATTGAAAAGACTGATGATTTTGGGGCAAAGG
CTTTAATAGGCGAAGGATCTTATGGGAGAGTGTACTACGCTGTGCTTGATAATGGGACAA
AAATGGCAGTGAAGAAACTTGATTCTACTGAAAATGAGCCCATATCAGAATTCTCGACTC
AGGTTTCCTTGGTTTCAAGATTGAAACATGAAAACTTCGTAGACATATTGGGATACTGTA
TGGAGCGTAACCTTCGCATAGTAGCCTATGAGTTTGCCACCATGGGGTCTCTGCATGATG
TTCTACATGGAAGAAAAGGAGTACAAGGTGCACAACCTGGTCCACCACTTAATTGGATGC
AGCGAATGAAAATTGCTGTTGATGCTGCCAAAGGACTTGAATACCTGCACGAGAAGGTCC
AGCCTTCTATTGTACATAGAGATGTTAGATCCAGCAACATCCTCTTATTTGAGGACTTCA
AGGCCAAGATTGCAGATTTCAATCTTTCAAATCAGGCTCCAGATATGGCTGCTCGGTTGC
ATTCTACTCGTGTGTTGGGAACCTTCGGTTATCATGCCCCAGAGTACGCAATGACTGGTC
AGCTGACCCAGAAAAGTGATGTGTATAGTTTTGGGGTTGTTCTCTTGGAACTTCTGACAG
GAAGAAAGCCTGTGGACCATACAGCGCCCCGAGGGCAGCAGAGCCTGGTTACATGGGCTA
CACCAAGATTAACCGAAGACAAGGTGACGGCTTGCATAGATCCCCGGTTGGAGGGTGAAT
ATCCGCCAAAGGGAGTTGCAAAGCTTGGGGCGGTAGCAGCTCTGTGTGTGCAATATGAAG
CCGAGTTCCGTCCAAGCATGAGCATTGTGGTGAAGGCTTTATCTCCCCTGACCTTGAGCA
GGCAAACTCCACCTGCGCCACCACCAGCGCTGGACAGTTGATCCACAGAATTGACCAAAG
AAATAAGATATACTTCTTAACTGAAGATGGTCTGCATGAACATAGTCCGTCCGCTTGCCT
CATGCTGCTATCTCTTTTACTGAAAGCTGATGATATGCAAGCCAAGATATGAAGAAATTG
GAGCCTTTACTTGTCAGATCACTTTAACTAACTGAATTAAGACGTGTGGCTTTGGTGGAA
CACAGAGACGTCCTTTTCCATATCTGTAAAACTTTTGGAATTATCTGTAGCGAAAAATAT
CTGCATTTTTTACATTCATCGAGAGTGGATTAGCGGCCGCTGGACAACCCAAGAGGTGAT
AACATCGTGCGAGAGACTTGCCGGCCAAGATGCCAATGTGACTACAGTGCCTGTCTCAGT
TTTGCGATTGACACGGCAGCTGACTCGGTTGTTTGAGTGGACGAATGATGTTGCTGATAG
ATTGGCATTTTCAGATGTTTTGACAAGCGATACTGTCTTCTCAGTTCTTATGACTGAGAC
ATATAGCCTTCTCGGTGTGGACGCAAAAGACGTCAGTTCACCGGAGAAGTATCTGCAGGA
TTATTTCACCAACATACTGAAGAAGTTGAAAGACCTTAAGGCTCAATCAGAGCAAACAGA
TATTTTCTTTTGAGAGGAATACTTGTTTATGTTGTTGTAAAAGTAATATACACTGTGACA
GGGATACATCAGCAGAGGCGTGCTCCTTTTGGAACTTGCAATCTTTCTTTCTTTTTTTCC
TAATTTGTTCCTCGTGTATTCATGAATTTGTAAAGGTTATACGATTGGTTAAGTTAGCGG
CCGCTCGAGCATTTTGGAAAGGGCCCAATTCGCCCTATAGTAG

Homology of Contig U35_13642 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67340.3	370	0.0	protein\|STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed
Brachypodium v1_2	Bradi4g35050.1	365	2e-180
Arabidopsis v10	AT3G59350.1	408	2e-178	Protein kinase superfamily protein \| chr3:21932930-21934883 FORWARD LENGTH=408