barSeed - Barley Seed Development Database

Probe CUST_1866_PI390587928

Source Contig U35_17500

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1866_PI390587928	Hv_44K_v2	GGATGATGTAGTAACGTAACGCCTCTTAATTTCATGAAATAAAATGCGATTTGTGCCAAA	1313	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.635	1.894	1.370	0.783	0.330	0.280
Raw	707.264	838.505	517.432	447.697	68.329	63.734

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC09366	1320	3e-25	1247 - 1306	100	60 / 60	plus	ABC09366
Harvest35	U35_17500	1388	3e-25	1314 - 1373	100	60 / 60	plus

Contig Sequence (1388 bp)

>U35_17500 1388 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGATTCCCCACGAAGAACAAGTTCATCATCCAATCCCAACC
CCAATCCAAGCCCCGCATTTGATCGGACCAGCGTCCCATTCCACCCCCTTCCCACCCTGT
CGAGGATGCACAAGGCGTCGTCGCTGTCGGAGCTGGGCTTCGACGCCGGGGGCGCCTCGT
CGGGCTTCTTCCGGCCGGTGGCCGACGGCTGCCCGGCCACCCCGACCTCCTCCGCCGTCC
CGCACCGCCGCCTCACCAAGATCTCCGTCATCGGGGCCGGCAACGTGGGCATGGCCATCG
CGCAGACCATCCTCACCCAGAACCTGGCCGACGAGATCGCGCTCGTCGACGCGCTCCCCG
ACAAGCTCCGCGGCGAGGCGCTCGACCTGCAGCACGCCGCCGCCTTCCTCCCGCGCGTCC
GCATCGCCTCCGGCACCGACGCCGCCGTCACCAAGAACTCCGACCTCGTCATCGTCACGG
CCGGGGCCAGGCAGATCCCGGGCGAGACCAGGCTCAACCTGCTGCAGAGGAACGTCGCCC
TCTACCGCAAGATCGTGCCGCCCGTCGCCGAGCACTCCCCGGACGCGCTGCTGCTCGTCG
TCTCCAACCCCGTCGACGTCCTCACCTACGTCGCCTGGAAGCTCTCCGGCTTCCCGGCCA
GCCGCGTCATCGGCTCCGGCACCAACCTCGACTCCTCCCGCTTCAGGTTCCTCATCGCCG
AGCACCTCGACGTCAACGCGCAGGACGTGCAGGCATACATGGTGGGTGAGCACGGTGACA
GCTCGGTGGCGATCTGGTCGAGCATCAGCGTGGGCGGGATGCCGGCGTTCAAGTCGCTGC
GCGACAGCCACCGGAGCTTCGACGAGGCGGCGCTGGAGGGCATCCGGCGCGCCGTGGTGG
GCGGCGCCTACGAGGTGATCGGCCTCAAGGGGTACACCTCTTGGGCCATTGGCTACTCTG
TCGCTAGCCTCGCCGCTTCCCTCCTCCGCGACCAGCGCCGCGTGCACCCTGTCTCTGTCC
TTGCCTCGGGCTTCCATGGCATCTCAGACGGCCACGAGGTGTTCCTCAGCCTGCCTGCCC
GCCTAGGCCGTGGCGGCATCCTCGGTGTTGCCGAGATGGACCTCACCGAGGCTGAGGCCG
CCCAGCTCCGGCGCTCCGCCAAGACGCTCTGGGAGAACTGCCAGCTTCTCGACCTCTGAG
CGAGGAACGCCAGTTGATCTACTTGCTGTAAAATCATGAAGCATTTGCAAGAACTCTAGT
ACTATATGTTGCTCTGTTCCTGCTCCCACACGAATTTGGGAGTGTTTTCTTAGGGATGAT
GTAGTAACGTAACGCCTCTTAATTTCATGAAATAAAATGCGATTTGTGCCAAAAAAAAAA
AAAAAAAA

Homology of Contig U35_17500 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01510.1	393	0.0	protein\|lactate/malate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g15560.1	355	0.0
Arabidopsis v10	AT4G17260.1	353	3e-155	Lactate/malate dehydrogenase family protein \| chr4:9674057-9675309 FORWARD LENGTH=353