barSeed - Barley Seed Development Database

Probe CUST_18668_PI390587928

Source Contig U35_13646

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18668_PI390587928	Hv_44K_v2	GGATCTGGTGTTCCTGATGTAACCGTGCTCTGTTGCAGTGAAGTGAATCCTGGTGTTTAT	425	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43884.1	455	2e-24	103 - 162	100	60 / 60	plus	ABC00035
JLOC1	JLOC1_28393.1	335	8e-25	106 - 165	100	60 / 60	plus
Harvest21	ABC00035	485	3e-25	426 - 485	100	60 / 60	plus	ABC00035
Harvest35	U35_13646	485	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (485 bp)

>U35_13646 485 Hv_44K_v2
TTCTTCTTCCCCGGGAAAAAACACGGAGCTGCGGAGATGTCTGGCCGCGGCAAGGGCGGC
AAGGGGCTCGGCAAGGGCGGAGCGAAGCGCCACCGGAAGGTGCTGCGCGACAACATCCAG
GGCATCACGAAGCCGGCGATCCGGCGGCTGGCGCGTCGTGGTGGCGTGAAGCGCATCTCG
GGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGC
GACGCCGTCACCTACACGGAGCACGCGCGCCGCAAGACCGTCACGGCCATGGACGTCGTC
TACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGCTTCGGCGGCTAGGGTTTTCCTTTC
CTTCCTCGTAGAGGCTTGTTTTATCGAGCGATGCCTGGGCATCCTGGTGGTGGTAGTTTG
GTGTCGGATCTGGTGTTCCTGATGTAACCGTGCTCTGTTGCAGTGAAGTGAATCCTGGTG
TTTAT

Homology of Contig U35_13646 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None