barSeed - Barley Seed Development Database

Probe CUST_18666_PI390587928

Source Contig U35_13648

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18666_PI390587928	Hv_44K_v2	TGAGATCGATGGCTCCTTCTTCTCCTCTGCTCGCCGCAGCAGTAGCACTGCTGGTGCTGG	23	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23157.1	535	2e-24	101 - 160	100	60 / 60	plus	ABC01854 ABC01868 ABC01876
JLOC1	JLOC1_16011.1	573	8e-25	101 - 160	100	60 / 60	plus
Harvest21	ABC01854	1312	3e-25	24 - 83	100	60 / 60	plus	ABC01854
Harvest35	U35_13648	776	3e-25	24 - 83	100	60 / 60	plus

Contig Sequence (776 bp)

>U35_13648 776 Hv_44K_v2
CGAACTGTGAGACGATCGAGTGCTGAGATCGATGGCTCCTTCTTCTCCTCTGCTCGCCGC
AGCAGTAGCACTGCTGGTGCTGGCCCTTGGGTCTGCCGTGGCGTATGCGGCGGCAGAGCA
TGAGGAGCTGAGGTCGAGGCAGCCTCCGGTGGCGCGCGGCCTCTCCTTCCACTTCTACCA
TGGGAGGTGCCCCGGGGCGGAGTCCATCGTGCGCAAGTTCGTCCAGGACGCCGTCCGCAA
GGACAAAGGCCTCGCCGCCGGCCTCCTCCGCCTCCACTTCCACGACTGCTTCGTCCAGGG
GTGCGACGCGTCGGTGCTGCTGCACGGGTCCGCCGCGGAGCCAGGGGAACAGCAGGCGCC
GCCCAACCTCACGCTCCGCCCCTCCGCCTTGAAGGCCATCAACGACATCCGCGACCAGCT
GGAGCACCACTGTCACGGCGCCGTCGTCTCCTGCTCCGACATCCTGGCGCTCGCCGCCCG
CGACTCCGTCGTCGCCACGGGCGGGCCCGACTACTGCGTGCCCCTCGGCCGCCGCGACAG
CGCACGGTTCGCCACACGGGACGCAGTGGGCTCCGGCCTCCCGCGGCCGTCCTCCAACGT
GACAACCCTCCTCGACGTGTTCCGCAAGCTCGGCCTCGAAGCCACCGACCTCGTCGCGCT
CTCCGGCGGCCACACCATCGGGCTGGGACACTGCAACTCCTTCGAGAAGCGGCTCTTCCC
GCTCCCGGATACCACCATGAGCCCTTCCTTCGTCGCCAGGCTAAAGCGGACGTGCC

Homology of Contig U35_13648 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73220.1	359	3e-105	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi3g33940.1	368	1e-108
Arabidopsis v10	AT1G71695.1	358	3e-79	Peroxidase superfamily protein \| chr1:26964359-26966557 FORWARD LENGTH=358