barSeed - Barley Seed Development Database

Probe CUST_18658_PI390587928

Source Contig U35_25628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18658_PI390587928	Hv_44K_v2	CGCCTGAAGCGGATGGTTATCACTGATGATTGCCTCAATCACCTTGCCCGTTCATTCCCC	573	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52024.3	4429	2e-24	557 - 616	100	60 / 60	plus	ABC15906 ABC15907
MLOC	MLOC_52024.6	1603	2e-24	924 - 983	100	60 / 60	minus	None
MLOC	MLOC_52024.5	3024	2e-24	1493 - 1552	100	60 / 60	minus	ABC15906 ABC15907
MLOC	MLOC_52024.2	6718	2e-24	4822 - 4881	100	60 / 60	minus	ABC14159 ABC15906 ABC15907
MLOC	MLOC_52024.1	6178	2e-24	4968 - 5027	100	60 / 60	minus	ABC15906 ABC15907
JLOC1	JLOC1_33277.2	2311	8e-25	585 - 644	100	60 / 60	plus
Harvest21	ABC26492	633	3e-25	574 - 633	100	60 / 60	plus
Harvest35	U35_25628	633	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_25628 633 Hv_44K_v2
CGCGTTCGTTCCCCCTCTGACGGTCGTCGCACTCCGCCCGCCGAGCACTCCCACCGAGCC
AGAGGAACGCCGCCGGCCACCGCCAAGGGATTTGCCTCTCACTCCGCTGTCGTCGTCGTC
GTCCTCCTCCACGGCTTCTCCGCTCCGCTGTACTGGCGATCCGTCCGTCCGGACGGACGG
GGACTGGTTCCTTGCTGGCCACAACCGGAAGCTGTAAAAAAATAATTGTGGCTTGTTAGG
ATCCCGGGAGCCGGCAAGATGCCCTACTTTCCAGACGAAGTGGTGGAGCACATCCTTGGC
TTCGTGTCGTCGCATCGTGACCGCAACGCTGCATCTCTCGTGTGCCACGCGTGGTACCGC
GTCGAGGGCCTCACTCGCCGCTCCGTCTTCATTTCCAACTGCTATGCGGTGCGCCCTGAG
CGAGTGCACGCACGTTTCCCCTGCCTGCGCTCGCTGACCGTGAAGGGCAGGCCATGTTTT
GCTGACTTCAACCTTGTCCCCGCGGGGTGGGGTGCCACAGCGGAGCCATGGGTGGATGCA
TGTGCCCGTACATGCCCTGGCCTTGAAGAGCTCCGCCTGAAGCGGATGGTTATCACTGAT
GATTGCCTCAATCACCTTGCCCGTTCATTCCCC

Homology of Contig U35_25628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g31620.1	569	3e-56	protein\|OsFBL55 - F-box domain and LRR containing protein, expressed
Brachypodium v1_2	Bradi4g18220.1	577	6e-67
Arabidopsis v10	AT3G26810.1	575	4e-51	\| Symbols: AFB2 \| auxin signaling F-box 2 \| chr3:9868342-9870464 FORWARD LENGTH=575