barSeed - Barley Seed Development Database

Probe CUST_18649_PI390587928

Source Contig U35_37609

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18649_PI390587928	Hv_44K_v2	GATTGTCAGTAATTTGACACAAAAGTACAATGAGCCATCCGTCGGGCCTCTGAAAAGTGA	459	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371216	4530	2e-24	711 - 770	100	60 / 60	plus	ABC16982
MLOC	AK366273	4241	2e-24	460 - 519	100	60 / 60	plus	ABC16982
MLOC	MLOC_43026.2	2217	2e-24	464 - 523	100	60 / 60	plus	None
MLOC	MLOC_43026.3	2154	2e-24	437 - 496	100	60 / 60	plus	None
MLOC	MLOC_43026.1	2247	2e-24	423 - 482	100	60 / 60	plus	None
JLOC1	JLOC1_27793.3	2272	8e-25	408 - 467	100	60 / 60	plus
JLOC1	JLOC1_27793.2	2297	8e-25	433 - 492	100	60 / 60	plus
JLOC1	JLOC1_27793.1	2285	8e-25	421 - 480	100	60 / 60	plus
Harvest21	ABC33317	519	3e-25	460 - 519	100	60 / 60	plus
Harvest35	U35_37609	519	3e-25	460 - 519	100	60 / 60	plus

Contig Sequence (519 bp)

>U35_37609 519 Hv_44K_v2
GGCAATCTAGGGCCATTGTTAGCGGGGGGGCTAGGGAGGGAAAATGCTGGTACTTTTCTA
GCACCTTCTTGATTTGTTCCGAGATTTGCGCGTGGATTAATGAAATGTGGCCTTCGTTTA
TCTTGCCCTGGATCATGCTAGGCTGGACCCTCGCCGGAGCGTCGCTGATCTGCCTGCCAG
CCGTGGCCTGCTCCAGAGAATACCGGCAGTCGACTTCCCTTGAGAGGGAAACCCGGACGG
TTGGTGGTTCTTTTTAGTCCGCCACTACGTCTCTGGTTCTTCAATTATGACAGCCATGGC
TGAAGGGTGTGTTGGTCCTAGCGAGCTTCACTTGAAGAAAGAACTTACTGCCTTGCGAAA
GGCACGGTTCCTGCGTGATCCTGAAACATGCTCATCCTGGAGGGGCCCATTGAGTTCTAG
ATCATGCATGACAAGTTCTAGTATTATAAATCACAATGAGATTGTCAGTAATTTGACACA
AAAGTACAATGAGCCATCCGTCGGGCCTCTGAAAAGTGA

Homology of Contig U35_37609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None