barSeed - Barley Seed Development Database

Probe CUST_18634_PI390587928

Source Contig U35_25635

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18634_PI390587928	Hv_44K_v2	CAACGCCGTAATTGGCCTCTGCTCTAGTGTCGGTAACACCGACTACGCCTTTCAGATGCT	919	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.825	1.130	1.804	1.820	0.553	0.682
Raw	37.170	76.520	111.212	178.871	19.343	26.245

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250909.1	1841	7e-23	979 - 1038	98	59 / 60	plus	ABC21917
MLOC	MLOC_14640.1	5105	7e-23	1034 - 1093	98	59 / 60	plus	ABC21917
JLOC1	JLOC1_9994.1	1794	4e-23	977 - 1036	98	59 / 60	plus
Harvest21	ABC27678	713	3e-25	654 - 713	100	60 / 60	plus
Harvest35	U35_25635	979	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (979 bp)

>U35_25635 979 Hv_44K_v2
ACACTTGCAGATCGAAGAAAGCAGAGCCGCCGCCGATGAGCGCGACGGAGAAGAGCGCGG
AGGGGGAGGGTGCCCAGCGCGTGGAGGCGTTCCTCGACATCCTCGACCGCCTCCCGATGG
GGGAGGTGGAAGCGGCGCTGACCTCCTGCGGCGTCGGCCCGACGGCGGAGGCCGCGGAGC
TGGTGCTCAAGTCCGATACCTGCTACTCCCGCCCCAAATCGGCCGTCCGCTTCTTCCGCT
GGGCGAGGGAGTCCGTGCAGCTCACCCCCCTGGCCTGGAACATCCTCGTCGACATCCTCG
GTAAGGCCGCCATGTTCGATCCCATGTGGGACGCCGTCCTCTCCATGAGCCAGGAGGGCG
GCGGCCTCCTCTCCGTCGCCACATTCGCCTCCATGTTCGCCTCCTACTGCGCGCGCGGCA
ACTTCAAGGAAGCCGCCATGGCCTTCGACGTCATGGAGCGCCACGGCGTGACCCCGGACG
CCGTTGCCCTCAACTCTCTCCTCGCCGCCATGTGCCGCCGGGAGGGCGGCGGGCAGGCCG
CGTGGGAGCTTTTCGAACGCTACAAGACCACGGTCGCGCCTGACGCCGACACCTTCGCGA
TACTGCTCGAGGCGTGGGAGAAGGAGGGGAACGTCCAGCGCGCCAAGAGCACCTTCGGCG
AGATGGTCGTTCGCGTCGGGTGGGACGTCGGCAACATGCCCGCCTACGATGCTTTTCTCT
CCACGCTCGTGCGAGGGGACCAGTTCAACGAGGCATTCAAGTTCCTCCAGGTGATGCGGA
CCAAGGGCTGCCTCCCGGNGCTCAAGTTCTTTGCCAACGCCATCGACCTTGTCGTCCGCA
AGGGAGACCATGCCAATGCTGTTGCTATCTGGCAAATTATGGTCTCCGATGCAGGACTGC
TTCCCAATCTCCCAATGTACAACGCCGTAATTGGCCTCTGCTCTAGTGTCGGTAACACCG
ACTACGCCTTTCAGATGCT

Homology of Contig U35_25635 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44030.1	465	1e-159	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g15960.2	466	3e-173
Arabidopsis v10	None