barSeed - Barley Seed Development Database

Probe CUST_18630_PI390587928

Source Contig U35_25639

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18630_PI390587928	Hv_44K_v2	TGTGTGGGTCGAGAGCATCGGGTTGTGAAACCATGGTTTTTCTAAACCAACCATATACAG	-1	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.011	1.776	1.336	0.580	0.168	0.220
Raw	5275.560	7277.327	4811.030	3398.011	334.065	481.338

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_5248.2	2798	6e-21	2623 - 2681	97	58 / 60	plus
JLOC1	JLOC1_5248.1	2804	6e-21	2629 - 2687	97	58 / 60	plus
Harvest21	ABC25707	1335	2e-22	4 - 65	97	60 / 62	minus	ABC25707
Harvest35	U35_25639	1335	2e-22	4 - 65	97	60 / 62	minus

Contig Sequence (1335 bp)

>U35_25639 1335 Hv_44K_v2
GAACTGTATATGGTTNNGGTTTAGAAAAACCATGGTTTCACAACCCGATGCTCTCGACCC
ACACACACACGAAAATTTTGAGCGTTTCACTCCTCCGCAGCATTTGGAAATGAAAAAAGG
CAAAGCCTAGTTATCACTTCACAACTAGAGCCATCTCTCCTTCATTCAGTCCCAGCAGAT
GCTTGATGATTCCAGTGAACTCTAGTGCCGATCAGTACTCGGCGTTGTCGTCCAGCTCCG
CGAGCGCCACCCTGCTGCCTTCGTCGGCGGTGATGACCAGCTTCTTCCCTTCCTTGGCAG
CAATAAGACCCTCCTTCAAAGCACTCTTGAGCTTCCTTAGGCTCATGTTGGTGAGGGCGG
CATTTTGCTTTGGGCACTTCTCCTCAGTGATGGCGACCTTGTCTAGTGTCTCGACGATGG
TATCGACGTGCTGAGAAACCTCACTGCCCTCGCTGGATTCTTCAAGTTCTTCGGTGATGG
CAGAGTCAGCAGTCTTGGCTTCAAGACCATCCTTTAAAGCACTTTTAAGCTTCCTTAGGC
TCATGTTAGTGATGGCAGAGTCAACAGTCTTGGCTGCAGATGAGGCAGGGGCAGCATGGA
TTCCCTCAACCGCCACCAGAGAGCTGGGGCTTTCAGTTTCAGCATCACTGAGTTCAACAT
CGTCAAACTCTGATGACAGATCAGCGCTGAAATCATCTTCCTCCCCACTCTCCTCATTTT
CTTTAGGTTCTTCAACTGTCTCCGGCATCTTGAGATCCTCCTCTTCTTCATTAGAATCAA
AGTTAGCTTCAGTGGAGTCGTTAGCCTTCTGCATATCCTCGTCCTCGAGGTCCTCCTCTT
CATCAGAATAAAAGTTCACGACAGCAGAGTCGGTCACCTTCTGCATATCCTCCTTAGTGA
GGTCATCCTCCTCCTCGCTGCTGTACTCGCTGGGGTCATCCTCCTCGCAGCTGTACTCAC
TGGGGTCATCCTCCTCACAGCTGTACTCACTGAGGTCATCCTCCTCGCTGCCCACTCCGT
CAAGGTCATGTTCCTCAGCACTCTCATCTTCTGTCAGATCACTCTGTGGCAAATCATCAT
CAGCGACTTCCTTCTCTGTAACAGCAGCTGGAATCATCTTGTTAGGAGCATCAGCAGTCT
CAACAGTTGAACTGAAAGCATTTTCCTTAATATCATCAGCAGCAACATCCTTCCCTGTCA
CCGGAGCTGGTGTCATCTCGATAGGAGCATCAGCAGTCTCAACGGGGGAATTGAGAGCAT
CTTCCTTGAAATCAGTAGCAGCAACTTCCTTCTCTATCACAGCAGCTGGGGTCATCTCGT
TAAGAGCATCAGAAC

Homology of Contig U35_25639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None