barSeed - Barley Seed Development Database

Probe CUST_18628_PI390587928

Source Contig U35_6809

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18628_PI390587928	Hv_44K_v2	CTGTATTGCAGGGGGCACAGTCGACCAATTAATCATCTGTAAATTATTCACATAAATAAA	737	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250566.1	979	2e-24	777 - 836	100	60 / 60	plus	ABC17012 ABC35360
JLOC1	JLOC1_4667.2	1109	4e-23	883 - 942	98	59 / 60	plus
JLOC1	JLOC1_4667.1	1015	4e-23	789 - 848	98	59 / 60	plus
Harvest21	ABC35360	583	3e-25	496 - 555	100	60 / 60	plus	ABC35360
Harvest21	ABC17012	839	3e-25	738 - 797	100	60 / 60	plus	ABC17012
Harvest35	U35_11836	583	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_6809	864	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (864 bp)

>U35_6809 864 Hv_44K_v2
GGGTAGCCATTACCGCCATTGAATTGGGAGTTAGGGACGACGAACCGATGCATTATCTTG
ACGGCCTCTCTTCTTCCTCCTCCTCCTCCTACTCCTACTCCATGATGCAGTGCAGGATCT
GCCACGAGGAGGAGGACGAGAGCTCCGCGGCAATGGAGTCTCCCTGCGCGTGCTCCGGCT
CTCTCAAGTACGCGCACAGGGGATGCGTGCAGAGGTGGTGCGACGAGAAGGGGAGCACCC
TCTGCGAGATTTGCCTTCAGGGTTTCGAGCCAGGCTACACAGTCCCTCCCAAGAAAGCCC
CGGTGGTCGAGACGCTGGTTACTGTCAGCGATGATGAGGATGATGATGATGAGGAGGAGG
AGCTGCACGGGCAGCTGGGCATGCACTACGCGGCGTCCGACACGCCGATGGACGGCCCGG
ATCCCACCGCTTGCTCGTGGTGCCGGCCATTGGCGATAACGTTCACCATCATCCTGCTGG
TGTGGCATCTCATCGCCGTGGTGACCATCGAGGCCGCGGAGCACTGCGCGTTCAGCCTCC
TCACGATGTACCTTCTTCGGGCCACGGGGATCTTGCTGCCGCTCTACGCCGTCATGAGGG
TGGTCCGAATGATCCAGCACGGGCGGCGCCAGTACCAGTTGCAACAGCTGCTGGAGGAGC
AAAGAAGGAATGCATCCAGGCGTAGCCAGGAGGAGCAGCAACAGCTTGTAATTAGTATTC
GCTGAGTAGTGCACATACTGTATTGCAGGGGGCACAGTCGACCAATTAATCATCTGTAAA
TTATTCACATAAATAAATATTTATATAGTAAAGTTGAAAATTACACTTGCTGCAGTCTAG
CACAGTTCAAAAAAAAAAAAAAAA

Homology of Contig U35_6809 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g28730.1	239	5e-71	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi2g28380.5	234	5e-85
Arabidopsis v10	None