barSeed - Barley Seed Development Database

Probe CUST_18624_PI390587928

Source Contig U35_6813

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18624_PI390587928	Hv_44K_v2	ACTCTTTTGCCGCACCTGTTAGAACTATTTTGGTTGTATATATGGAATGAAGGTTACTGA	1416	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.676	1.640	3.156	2.698	0.864	0.730
Raw	8.159	33.696	54.359	72.114	7.517	6.988

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370151	3178	2e-24	2718 - 2777	100	60 / 60	plus	ABC15964
MLOC	MLOC_70898.1	2996	2e-24	2027 - 2086	100	60 / 60	plus	ABC15964
JLOC1	JLOC1_47073.1	2492	8e-25	1805 - 1864	100	60 / 60	plus
Harvest21	ABC15964	1493	3e-25	1418 - 1477	100	60 / 60	plus	ABC15964
Harvest35	U35_6813	1492	3e-25	1417 - 1476	100	60 / 60	plus

Contig Sequence (1492 bp)

>U35_6813 1492 Hv_44K_v2
CGGCGAGGGCGCGTCCTCCGGCGGCGGGACTTTCGTGCTCGCCAAGGCGTTCGCGGCGGG
GGTGATCCTCGCCACGGGGTTCGTGCACATGATGCACGACGCGGAGGAGAAGTTCGCGGA
CCCGTGCCTCCCGGCCACGCCGTGGCGCCGGTTCCCCTTCCCGGGCTTCATCGCCATGCT
CGCCGCGCTGGGGACGCTCGTCATGGAGTTCGTCGGCACCCGCTTCTACGAGCGCAGGCA
CGGCGAGGAGGCCGCCGCCGCCGCGGCCACTGCTGACGACACCACTGCGCTGCTCGAGGA
CGGCACACTCGCAGGGATTGCTGCCGCCGCGGTGAGCGGAGACGACGAGAAGCAGGACGC
CATGCATATCGTGGGCATGCGAGCGCACGCGGCCGCGCACCAGCACAGCCATGCGCATGG
ACATGACGCGTGCGATGGAGGAGCCGTGTACGACGCCCACGCCCACGCCCACGCCCACGG
CCATGGCCACGACCATGGGCATGGGAGCGAGGAGAGGCCGTCCCAAGCTCATCATGTGGT
TGTCTCGCAGATTCTGGAAATGGGGATTGTATCACATTCCGTGATCATCGGGCTATCCTT
GGGCGTTTCGCAGAGCCCGTGTACCATTAAGCCTCTTGTTGCTGCCCTCTCCTTCCACCA
GTTCTTCGAGGGTTTTGCCTTGGGTGGCTGCATTTCCGAGGCTCAGTTCAAGAGTTTCTC
GGCGCTCCTGATGGCTTTCTTCTTTGCTATCACAACACCAGTTGGGATCACTGTCGGGGC
GGGGATCGCGTCGTTCTACAACGCCAACAGCCCCAGGGCATTGGTAGTGGAGGGTATTCT
GGATTCAGTTTCATCTGGTATACTGATCTATATGGCATTAGTGGACCTCATTGCTGCTGA
TTTCCTTAGCCGGAAGATGAGCTGCAATCCGAGGCTGCAAGTGTGCTCATACGTTGCCTT
GTTTGTTGGGGCTATTGCCATGTCATCACTTGCTATCTGGGCTTAGTGCCAGTGAGGATT
CTTGAAGAGTGGGGTCTAGGCGTTCAATGCACTACGACCTGTTGCCTAGCTACCGGTAAC
TGAGTAAGATGGAAGGCCTTTTCTTTCTCTGTCCATTCTTTTGTTTGTTCTTCTCATGGT
GCTGGGCCGTGTAATGTCCAAAGAAAAGGAAGTCCCTCTTTGGGGTACATGTTGCGGTAA
AGAATTGGGACAAGTTAGTTAGGTAATAAAGAGTTTTTGAGTCCCAACAGTCTTTGCAAA
TGTACAGTCCATCCTCGGTGTTAGATAAGCGGACTTGTCTGTTCTCAAGTATAATCTTAC
ACATACATCAATGTGGATCTCCTGAAAGTTGCTTCAACTGTTCGAATACAATGGCATGTG
CTGTTTGAAATGAGGATGGTTATGAACTCACGCCCGACTCTTTTGCCGCACCTGTTAGAA
CTATTTTGGTTGTATATATGGAATGAAGGTTACTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_6813 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g37010.1	405	3e-124	protein\|metal cation transporter, putative, expressed
Brachypodium v1_2	Bradi1g37667.1	394	1e-143
Arabidopsis v10	AT1G10970.1	408	4e-99	\| Symbols: ZIP4, ATZIP4 \| zinc transporter 4 precursor \| chr1:3665201-3666933 REVERSE LENGTH=408