barSeed - Barley Seed Development Database

Probe CUST_18622_PI390587928

Source Contig U35_6815

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18622_PI390587928	Hv_44K_v2	ATATGAGAAGAGGTCTGAGTATTGCGACCGCGATCTAACTAAAGCTGATCTGCAGATGGT	958	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.892	1.532	1.928	1.663	0.815	0.703
Raw	23.222	62.167	68.454	93.072	15.775	14.966

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75487.2	619	7e-23	153 - 212	98	59 / 60	plus	ABC14788
MLOC	MLOC_75487.7	760	7e-23	153 - 212	98	59 / 60	plus	ABC14788 ABC15774
MLOC	MLOC_75487.1	1177	7e-23	153 - 212	98	59 / 60	plus	ABC14788 ABC15774
MLOC	MLOC_75487.8	1257	7e-23	153 - 212	98	59 / 60	plus	ABC14788 ABC15774
MLOC	MLOC_75487.6	688	7e-23	153 - 212	98	59 / 60	plus	ABC14788
MLOC	MLOC_75487.10	2221	7e-23	153 - 212	98	59 / 60	plus	ABC14788 ABC15774
MLOC	MLOC_75487.4	1414	7e-23	153 - 212	98	59 / 60	plus	ABC14788 ABC15774
MLOC	MLOC_75487.5	1417	7e-23	153 - 212	98	59 / 60	plus	ABC14788 ABC15774
MLOC	MLOC_75487.11	2224	7e-23	153 - 212	98	59 / 60	plus	ABC14788 ABC15774
MLOC	MLOC_75487.9	1241	7e-23	153 - 212	98	59 / 60	plus	ABC14788 ABC15774
MLOC	MLOC_75487.3	1250	7e-23	153 - 212	98	59 / 60	plus	ABC14788 ABC15774
JLOC1	JLOC1_50358.7	2049	4e-23	153 - 212	98	59 / 60	plus
JLOC1	JLOC1_50358.6	1555	4e-23	153 - 212	98	59 / 60	plus
JLOC1	JLOC1_50358.5	1542	4e-23	153 - 212	98	59 / 60	plus
JLOC1	JLOC1_50358.4	2059	4e-23	153 - 212	98	59 / 60	plus
JLOC1	JLOC1_50358.3	1499	4e-23	153 - 212	98	59 / 60	plus
JLOC1	JLOC1_50358.2	2062	4e-23	153 - 212	98	59 / 60	plus
JLOC1	JLOC1_50358.1	1496	4e-23	153 - 212	98	59 / 60	plus
Harvest21	ABC14788	1634	3e-25	959 - 1018	100	60 / 60	plus	ABC14788
Harvest35	U35_6815	1634	3e-25	959 - 1018	100	60 / 60	plus

Contig Sequence (1634 bp)

>U35_6815 1634 Hv_44K_v2
GTGATAGCAAGCTGGAGAATCTCAATAAGGCTACTGAACTGGACCCTACCCTTACATACC
CCTATATGTTTCGAGCTGCATCTTTGATGAAAAGGCAAAGTGTTGAAGCAGCCCTGATGG
AGATTAACCGGATCCTGGGATTCAAGCTGGTCCTGGAATGCTTGGAGCTAAGGTTCTGTT
GCTACCTTGCTCTAGAGGATTACAGAGCTGCCTTATGCGATGTACAGGCAATCCTCACGC
TTGCTCCAGATTATCGTATGATTGGTGGTCGGGTGGCTGCGAAGCAGCTGCGTACCCTTG
TGATGGAGAATGTAGAGCAATGGACGACTGCTGATTGCTGGATGCAGCTTTATGATCGGT
GGTCCTCTGTGGATGATATTGGATCTCTCTCGGTCATATATCAAATGCTGGAGTCAGATG
CTGCTAAAGGAGTACTGTACTTCAGACAATCTTTGCTACTTCTCAGATTAAATTGTCCTG
AGGCAGCAATGCGCAGCTTGCAGCTTGCTCGCGAGCATGCAGCAAGCCAGCATGAACGAC
TTGTTTATGAAGGATGGATACTGTATGATACTGGCCACTGCGAGGAAGGATTGCAGAAAG
CGGAAGCATCCATTGCCATACAGAGATCATTTGAGGCGTTCTTTCTAAAAGCTTATGCTT
TAGCTGATTCGAGCCTCGAGCCGTCAACCTCAGCAACAGTCGTATCGCTTCTTGAAGATG
CATTACGGTGCCCCTCAGATAGACTTAGGAAGGGCCAGGCTTTGAACAACCTTGGGAGTG
TTTATGTGGATTGCGGGAATCTAGACTTGGCAGCTGAATGCTACATTAATGCTCTAAAGA
TTGGCCACACGAGAGCTCATCAAGGCCTCGCCAGGGTTCATTTCCTTAGGAATAACAGGA
CCGGTGCATTCGAGGAAATGACAAAGCTGATAGAGAAGGCCAGGAGTAATGCATCAGCAT
ATGAGAAGAGGTCTGAGTATTGCGACCGCGATCTAACTAAAGCTGATCTGCAGATGGTCA
CCAAACTTGACCCCCTGCGTGTTTACCCCTACAGATACCGTGCTGCTGTTCTGATGGACA
ACCACAAGGAGAAAGATGCGATCTCAGAGCTGACCAAGGCAATCGCCTTCAAGGCGGACC
TGAACCTGCTCCACCTGCGTGCGGCCTTCCATGAGCACGTGGGCGACATCTCAGGCGCCC
TCCGGGACTGCCGTGCAGCACTTTCCGTGGACCCCAACCACCAGGAGATGCTCGAGCTTC
ATCACCGGGTGAACAGCCAAGAACCCTGAGCCCGTTGTTGTACATACAGGAGGGGCTGCC
ATAGCGAAAACCCATACCAGTGTATGTTCTGTACCATACACAGCAAGCAGTAATTTTTAG
TTTTGATGGTGTCTAGTGCGGCTGTAAGGATTGTGATCATCAAAACGTCTAAAATTAAGC
CACGTGCTATATGGAAAATATTACAATTTCCACTTTTGTCACTTGGCTACACTAACTGGG
CAATAGGCTTCAGCATGCAACAATACACTACATCCTGCAGATTGAACTGAAGGCCTGGCT
ATTGTGTTCTTCAGTTTTTGCACTGCTGTAAAGCTCCACTTCTTTTGTGTTAGTAGGGAT
CTGTTATGACATGC

Homology of Contig U35_6815 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g37520.1	887	protein\|BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed
Brachypodium v1_2	Bradi4g15130.1	889
Arabidopsis v10	AT4G02680.1	888	\| Symbols: EOL1 \| ETO1-like 1 \| chr4:1181202-1184328 REVERSE LENGTH=888