barSeed - Barley Seed Development Database

Probe CUST_18618_PI390587928

Source Contig U35_6819

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18618_PI390587928	Hv_44K_v2	CTATGTACGTATCTTGGCGTCAGGATTTATCACCGAATGGATGCATGTTGCACTAAAAAA	1446	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.086	2.314	2.081	1.086	0.374	0.390
Raw	413.290	1405.274	1085.574	916.328	105.273	121.555

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61532.1	1802	3e-21	105 - 158	100	54 / 54	minus	ABC15320
JLOC1	JLOC1_40214.1	1667	2e-21	68 - 121	100	54 / 54	minus
Harvest35	U35_6819	1517	3e-25	1447 - 1506	100	60 / 60	plus

Contig Sequence (1517 bp)

>U35_6819 1517 Hv_44K_v2
CGACACCTCCTACTCCTCCTTGGCGGCGCCGGCGGCAATGGCGATCTCCTCCGGGCCGGC
GGGCGCGGCCGCGGCGGCCCCGCGCCGCAGGAGCAGGTCGACGGTGCTCCTGATGGCCAA
CTACGCCGCGCTGCTGGTCGGCTCCGTCGTCTCCAGCCTGCTCTCCCGGTTCTACTTCGA
GCACGGCGGGCAGAACAAGTGGGTGGTCACGCTGGTTCAGTCGGCGGGGTTCCCGACGCT
CGTGGTCGCCGTGTTCCTCGCCGGCCGGCCCGTTTCCGCGCCCCGGCCGTTTCTCTGGTT
CTCGCGCCGGTTCCTGGCCGTGTGCCTGTTCATCGGCGCCCTCATGGGCGTCAACAACCT
CCTCTTCGCCTACAGCTCGTCGCTCCTGCCGGTGTCCACCTCGTCGCTGCTGCTGTCCAC
GCAGCTCGCCTTCACGCTCGTCCTCGCCGTCGCCATCGTCCGCCACCCGCTCACCTTCGT
CAACCTCAACGCCGTCGTGCTCATGACGCTCTGCTCCGTGCTCCTCGCGCTCCGGTCGGG
GGACGCCGGCGAGAGCCCGGACCGGAAGGGGTACATCCTCGGCTTCGTAGTCACGCTCGG
CGCCGCGGGGCTCTTCTCCGCGTACCTCCCGGTGATGGAGCTGCTGTACCGGGAGGCGGT
CTCCGGCGGGTTCATCCTGGCGGTGGAGGTGCAGGCGGTGATGCAGGCCATGGCGTCCGT
GGTGGCGGCGATCGGACTCGCGGCGACCGGCGGTTTCGGCAACGACGTGGCCCACTGGAA
GGGGTCGCACGCCGTGTACTGGGTCGTGGTCGCAACGCTGGTGGTGACGTGGCAGGCGTG
CTTCATGGGCACCGCCGGCGTGATCTACCTAACGTCGTCGCTCCACAGCGGCGTGTGCAT
GGCAGCGGTGCTCACGGCCAACGTGATTGGCGGCGTCGTCGTGTTCGGCGACCCGTTCGG
CGCCGAGAAGGCCGTCGCCACCACGCTCTGCGTCTGGGGCCTCTCCTCGTACCTCTACGG
CGAGTACACCAAGAGCAAGAAGAAAGCCGCCGCTGATGATCAGGACGACCACGACGACGC
CATCGTCCCCGCCGCCCATGACGACGGCGAGCAGAAGAGCCTCACCGCCGGCAGCCGCGA
GCCGGCAAGCGACGCCGCCGAAACCGTCTGAAGCAAACGGGGCAGCGCCGGCCGGCCACA
GGGGGCACGTACGAACGAACGAACGAACGAACCATGTGATCGATGAGTACGTTGCAACAA
GAATGCAATGCAAACTGAAAATTTCTTGGTACCCCGAGAAAGCGAAGTGGCATGCAGTAT
TGAAGATGCATTAGGTGTAGACGTGTCATGTTACGTCGTGTAGGCAAAAGAGTTATATTT
ACAGCTTACAAGGAGACAAGAATGGTGTGGTGATGATGACCGATGCTTGTTTCGTGGGCT
GCTATGCTATGTACGTATCTTGGCGTCAGGATTTATCACCGAATGGATGCATGTTGCACT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_6819 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48300.1	384	3e-120	protein\|purine permease, putative, expressed
Brachypodium v1_2	Bradi2g17050.1	375	1e-121
Arabidopsis v10	AT1G30840.1	382	3e-51	\| Symbols: ATPUP4, PUP4 \| purine permease 4 \| chr1:10974581-10975729 FORWARD LENGTH=382