barSeed - Barley Seed Development Database

Probe CUST_18616_PI390587928

Source Contig U35_6821

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18616_PI390587928	Hv_44K_v2	AAGTACTTCTCACTTCTCAGCCATCCTTCTTTTTAAGCAAACGCTGCAGATGTGCACTGG	709	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.064	1.830	1.080	0.739	0.375	0.378
Raw	854.732	1192.939	616.915	669.602	120.923	130.546

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_40988.1	1878	8e-25	1782 - 1841	100	60 / 60	plus
Harvest21	ABC24149	800	3e-25	32 - 91	100	60 / 60	minus	ABC24149
Harvest35	U35_6821	800	3e-25	710 - 769	100	60 / 60	plus

Contig Sequence (800 bp)

>U35_6821 800 Hv_44K_v2
AAGAAAAAGAAGAAGTCTGTGGAGGCAGAAGATGGAAAGCATTCCAATAACATAAGAACA
TTGGTGGATGGGCTAGTCATAGAAGATCTTTCAGCAGGAAACCAAGATGCCAAAGTGGCT
TCAGAGGGCAACAAGGTTTACATCAATTATGTTGGCAAGCTGCAGGATGGAAAAACTGTT
CATTCTAATGCCGATGAAAAGCCCTACAAGTTTAAGCTTGGTTCTGAGAAAGTGATGCGT
GGATGGGACCTCGGTATTACTGGTATGCGTGTTGGCGAGAAGAGGAGGCTAACCATCCCT
CCATCACTGTGCGACAATGGTGGTAAATCGGCCGTGGAATTCCCCAAAGATTCAACAATC
ATTTATGAAGTGGAGTTGGTGAAAGTCCGGTGAAACGCGCGAGCTTCTTGTTCCTGTTTT
ACGCCGAAGGCTGGGGCGTGGATTTTTGTCCACCTACAGATGGAGATTGCGTCTTTTGTC
CCGCATAGGCTATGTGGTTTCTTCTGCAGAACTGTTGTGTGAGCGACGGGAATGAAGGAT
TTGATGAGCATTCAAAGTTAGCAAAGAGAAACGTATCTATTCTATCTTGCGTGCTGAACT
GGTCAGTTTGTGGGACGTTTTCGTGCAATTCTGTCGAATGTGAGCATTTTATCTGGCTCC
TGTCAATGTAACATTCCTGTGCCAACCGTACTAGCTTCATCAGTATGGGAAGTACTTCTC
ACTTCTCAGCCATCCTTCTTTTTAAGCAAACGCTGCAGATGTGCACTGGGAGGTATTATT
TTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6821 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g12270.1	425	1e-51	protein\|peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None