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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18611_PI390587928Hv_44K_v2GAGAATTGTGTATAAGCGTAGGAGTGCAGGCCTGATGGATTGATGCATTTATTCTTTCGG811GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.6582.8911.3970.6830.1660.275
Raw 121.347215.82187.85269.7184.0599.490



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_15615.114538e-251239 - 129810060 / 60plus
Harvest21ABC144834403e-25378 - 43710060 / 60plus
Harvest35U35_68268743e-25812 - 87110060 / 60plus



Contig Sequence (874 bp)

>U35_6826 874 Hv_44K_v2
TACATCTTCCTCTTTAATTACCATCACCCACCGAGTTGTAAGCTGCTGCTCGCCGAGGCA
TTTTCTTGGTCGAATCGACTTCGAAGCTAGCAACCGAGCAGAGCAGATGGCGGCTGAGGA
GGCGAAGAAGGTGGAGGTGGAGACGACGACGGCCACCAAGGACATCGCCGAGGAGAAGGC
CATCGTGCCTGTGCACGACGACTCCAAGGCTATCGTCGCCGTCGTCAAGGATGCTGAAGG
TACTAGAGGTTCGTCTGAAAGAGATGCTTATCTCACCAAGATTATGTCCGAGAAGAGAAC
GACGCTGATCAACGCCTGGGAGGAGAGCGAGAAGGCGAGAGCTGAGAACAGGGCGGCCAA
GAATCTGTCCTTCATCACTTCATGGGAGCACGCCAAGGAAGCGGAGATGGAGGCCGAACT
GAAAAAGATCGAGGAGCAACTGGAAAAGAAGAAAGCAGCGTACAAGGAGAAGCTGAAGAA
CAAGCTCGCGATGCTCCACAAGTCGGCGGAGGAGAAGAGAGCGATGGCGGAGGCGAAGCG
AGGCGAGGAGATAATCATGGCGGAGGAGATGGCAGCCAAGTACCGTGCCAAAGGCGAAGC
CCCGACGAAGCTCTTTGGGCTCCTGAAAGCATGAGAACTGTGAATCGAGGAAGCCATCGA
CACTCTCGATCTTCAGAGTGTACATATGTTGGGGTTGTTACTTACGGCTTTCGTGCATGA
CTTGTTAGTGGTGTGTGTACATGTGTTTTGCAAGCCATTGGTGTGTGTGTGTTTTCCTGT
TGGATGATTTGATATCTGGTTAAATTTGTAAGAGAATTGTGTATAAGCGTAGGAGTGCAG
GCCTGATGGATTGATGCATTTATTCTTTCGGTGT



Homology of Contig U35_6826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None