barSeed - Barley Seed Development Database

Probe CUST_18610_PI390587928

Source Contig U35_6827

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18610_PI390587928	Hv_44K_v2	TGTTATAAGGCAGATAGGCACGGTATACCTTGCAGATGACGTTGTCAAGACTTGGATTGG	474	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56093.3	3323	7e-23	394 - 453	98	59 / 60	plus	ABC12946 ABC17435
MLOC	MLOC_56093.2	3445	7e-23	2862 - 2921	98	59 / 60	minus	ABC12946 ABC17435
MLOC	MLOC_56093.1	3025	7e-23	2865 - 2924	98	59 / 60	minus	ABC12946 ABC17435
JLOC1	JLOC1_36257.3	3751	4e-23	552 - 611	98	59 / 60	plus
JLOC1	JLOC1_36257.2	3429	4e-23	480 - 539	98	59 / 60	plus
JLOC1	JLOC1_36257.1	3406	4e-23	480 - 539	98	59 / 60	plus
JLOC1	JLOC1_36256.1	4065	4e-23	2868 - 2927	98	59 / 60	minus
Harvest21	ABC37387	453	6e-22	393 - 452	97	58 / 60	plus
Harvest35	U35_6827	535	3e-25	475 - 534	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_6827 535 Hv_44K_v2
ACTGATTTTCACACTCGCTGCATTTCCTCCCGTCTTCCTTATCCCTTCGCCAGCTACCTC
CACTGCTACGGAGTGAGCATGAGCTGAATCGCCGCAATATCCATCCATGGCTCCGCCCTG
AAGACGAGTCAGTTTCGCAAGCCGGTTTAGTCAGCTCTCGTCAACGCTGCTGCCTTCTCG
ACTCCACTGCAGATCTCACACGCTTTGCGCTCGCGCGGGCTCCCGTCAGACTTGATCACA
CTGGTCGTTCGTTCGGGACGTACCCTGCTGTCCTGCTCTATAGGCCACGATCTGTTAGTC
TCCAAAAGATCAAATGGCCGAGGCGGTACTCATTGTTGTCACAAAGATTGGTGACATTTT
ACTAGAAGAAGCCACCAAAAGTGTCATAGCTAAGATTTCTGAAAAGGTTACTAATCTGAA
GGAATTGCCAGTAAAAGTTGAGGAAATAAAGAAGCAACTGACCATGATGGGCAATGTTAT
AAGGCAGATAGGCACGGTATACCTTGCAGATGACGTTGTCAAGACTTGGATTGGG

Homology of Contig U35_6827 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None