barSeed - Barley Seed Development Database

Probe CUST_18606_PI390587928

Source Contig U35_6831

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18606_PI390587928	Hv_44K_v2	TATCTTGAGAGTGTTGAGAATAATTTCAGTCTATGCTAGTAAACATAGTGTGTGCCATCA	919	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9815.2	3387	2e-24	3279 - 3338	100	60 / 60	plus	ABC18218 ABC18351
MLOC	MLOC_9815.3	1478	2e-24	1370 - 1429	100	60 / 60	plus	ABC18218 ABC18351
MLOC	MLOC_9815.4	2780	2e-24	2672 - 2731	100	60 / 60	plus	ABC18218 ABC18351
JLOC1	JLOC1_6365.2	2895	8e-25	2689 - 2748	100	60 / 60	plus
JLOC1	JLOC1_6365.1	1631	8e-25	1425 - 1484	100	60 / 60	plus
Harvest21	ABC18218	1050	3e-25	920 - 979	100	60 / 60	plus	ABC18218
Harvest35	U35_6831	1050	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (1050 bp)

>U35_6831 1050 Hv_44K_v2
CCAAATCATCTTTTTAGTGTTTTGCTTGAACAGTCAGATGTGTAAATGTGTGTCTACTAG
AAGTAGCTGATGTTTTTGGTCACCACTAAACAGGTCAGAAATTGTCTGGCGTTGCTGGGA
GCCCAGCCTATGTGGCGCCTGAGGTGTTGTCAGGAAGGTATTCTGAGAAAGTAGACATAT
GGGGTGCTGGGGTGCTACTCCATGTGCTGCTGCTTGGTTCACTTCCATTTCAAGGGGGCT
CTCTAGAAGCTGTCTTTGAAGCTATAAAGACAGTTGAGCTTGATTTCAACAGCGGTCCAT
GGGAATCAATGTCAGTTCTTGGCCGTGATCTTATAAGTCGAATGTTGGATCGAGATGTCT
CTTCTAGGATAACTGCTGATCAAGTTCTTTGTCATCCATGGGTGTTGTTCTACACGGAAT
GTACCCTGAAGGCTGTAACTCCTAATGTCACTAACAAGATTGTAGCACCCAGAATTGCAT
GGGACAGAATTAGGTCACATTGTGAGTCATCCGCTTCAGATTCGTCGAGCCAGAGGTCGG
AGGACCAGGATGAATGTGGCATAGTCGACGCATTGACAGCGGCAATAACACATGTTAGAA
TATCAGAGCCGAAAAGGACCCGCCTTTGCAGCCCCGGCATTCCCATACAGCAGGAGTGCT
CCTCAAACTTGAAGAGCAACCTGTGCACGGCGTTCTGACATGACACCAATGTATAGCTTC
CTTGTGTTCTGGTCTGATGTCAGTGGTGGCTCGGCCTGCTGGTTGGTTGTCTCTGTGCTG
AGGATAATAACGGGTTTCCTGCCAGAGCAAGCGAGCGTTTGACATGGTGATGCTGTAGAT
TGCGGTGATGGCTGATGAACCCGACATGGTAGCTGATGCTGTAAATTTTGTAAATAGAAT
GATCCATGTAGCTAATTTATATCTTGAGAGTGTTGAGAATAATTTCAGTCTATGCTAGTA
AACATAGTGTGTGCCATCATCCATGTAGCTAATTTCTTGTTTCTTCCGGTTCTATTGAGA
TCAGAGTTTTGCATAAAAAAAAAAAAAAAA

Homology of Contig U35_6831 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g29170.2	454	8e-90	protein\|CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi4g32590.1	449	7e-92
Arabidopsis v10	None