barSeed - Barley Seed Development Database

Probe CUST_18603_PI390587928

Source Contig U35_6834

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18603_PI390587928	Hv_44K_v2	ATACTATCTTTTGATTGCGAAACACAAACACAAGGTACCTCGAGTTCACCGGCTAAAAAA	1393	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44295.1	1312	3e-22	1255 - 1310	100	56 / 56	plus	ABC15337 ABC16360
JLOC1	JLOC1_28697.1	1341	1e-22	1255 - 1310	100	56 / 56	plus
Harvest35	U35_6834	1464	3e-25	1394 - 1453	100	60 / 60	plus

Contig Sequence (1464 bp)

>U35_6834 1464 Hv_44K_v2
GCGAGAACAGGCCCTTCCTTGATGGCCCGGTAATGCTGCGCCTACCAGCAACTGGAGATC
CCGCGCCGTCGCCTACCACAGCACCGGCGCCGGCGCCGGATGTGGTGCCCAATGTTGTGA
CGCCGGTGGCGGCGGTCGGAAGAGGGAGAAAGTACAGTGTTCCTGGTATGGTCCTTATGG
TTGTGCTGCCAAGTCTAGCAGCCGCAAACTTTATCGCCGGCTTATTTATCTGGAGGAGGA
GGCGGCGGTCACCAGCACAAGCAAATCAACCATATCCCAGTTACTCCACGGAAGGTAAGG
ACACTGAGAGTGTAGACTCGATGCTGATGGACATTTCAACTCTGCGAGCTGCCACTGGGG
ACTTCGCGGAAAGCAACAAGCTTGGCCAAGGAGGCTTTGGTGCGGTGTACAAGGGTACTC
TACCAGATGGCGAAGAGATAGCGGTGAAGAGATTATCCAAGAGCTCGACGCAGGGGGTGG
AGGAGCTCAAGAACGAGCTCGCCCTCGTCGCAAAGCTCAAGCACAAGAATCTCGTCAGGC
TTGTCGGTGTGTGCCTGGAGCAGCAGGAGCGACTGCTCGTCTACGAGTTCGTCCCCAACC
GGAGCCTCGACCAGATCCTATTCGACACTGAGAAAGGGGAGCAGCTTGACTGGGGAATGA
GGCACAGGATCATACGCGGGATCGCTCGAGGCCTGCAGTACCTCCACGAAGACTCCCAGC
TCAAGGTCGTCCATCGTGATCTCAAAGCCAGCAACGTCCTTCTTGACGCCGACATGAACC
CCAAGATCTCGGACTTTGGCCTCGCGAGGCTCTTCGGGAGAGGCCAGACGCAGGGCGTCA
CCAACCGTGTCATTGGCACATACGGATACATGGCGCCGGAGTACTTGATGCGCGGGAACT
ACTCCGTGAAATCGGATGTGTTCAGCTTCGGGGTAATGGTTCTGGAGATCGTTACAGGAA
GGAAGAACAGTGACACTTTGCAATCTCAAGATCTCTTGACCATGGTCTGGGAGCATTGGT
CGGACCGAACGGTGTTGGAGATGATGGACCCGTGTATGAACAATGGCTTCTTAGAGAGCG
ACGCGAGGAGGTGCGTCCAGATAGGGCTGTTGTGCGTCCAGGAGAACCCGGTGGATAGGC
CGATGATGTCTGCGGTGGGCATGATGCTTGGAAGCGACACGGTGTCTCTCGGTGCCCCGT
CAAAGCCAACGTCTACATTTTACACTAGGAACGCTAGTGCCGACTCTGGAAATGGGTTCA
ATGTCTCGACTATTTCAGTGAATGATGGCCCCAAGGATCATTCTACTACGACTTAACTAT
AGTATTGTCCATCTTTCTTTAGGAGTTTCATCTTTTGGATTAGTTAGTTGGTTGTACATC
TAAAATTCAACATATACTATCTTTTGATTGCGAAACACAAACACAAGGTACCTCGAGTTC
ACCGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35310.1	671	0.0	protein\|TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed
Brachypodium v1_2	Bradi1g25552.1	671	0.0
Arabidopsis v10	AT4G23180.1	669	4e-128	\| Symbols: CRK10, RLK4 \| cysteine-rich RLK (RECEPTOR-like protein kinase) 10 \| chr4:12138171-12140780 FORWARD LENGTH=669