barSeed - Barley Seed Development Database

Probe CUST_185_PI390587928

Source Contig U35_19581

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_185_PI390587928	Hv_44K_v2	CTGCAGCTGAAGTAATCTACGATCTCGTTGATCCAAATGCCAACCTGATATTTGGTTCTG	498	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.072	0.176	1.066	2.333	1.099	1.278
Raw	130.576	500.554	2657.750	9453.307	1506.552	1884.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9203.1	1901	2e-24	1378 - 1437	100	60 / 60	plus	ABC12279
MLOC	MLOC_9203.2	2030	2e-24	429 - 488	100	60 / 60	minus	ABC12279
MLOC	MLOC_9203.3	2067	2e-24	384 - 443	100	60 / 60	minus	ABC12279
JLOC1	JLOC1_6031.2	2350	8e-25	1625 - 1684	100	60 / 60	plus
JLOC1	JLOC1_6031.1	2258	8e-25	1533 - 1592	100	60 / 60	plus
Harvest21	ABC12279	1097	3e-25	499 - 558	100	60 / 60	plus	ABC12279
Harvest35	U35_19581	988	3e-25	499 - 558	100	60 / 60	plus

Contig Sequence (988 bp)

>U35_19581 988 Hv_44K_v2
GTGGAGGTGCCCCTGTAATTGCTGGAATCGCTAAGTCCATGGGTATACTGACTGTGGGTA
TTGTCACAACACCCTTTTCATTTGAGGGGAGGAGGCGCGCAGTTCAGGCTCAAGAAGGAA
TTGCAGCCTTGAGAAATAGTGTGGACACTCTCATTGTCATCCCAAACGACAAGCTGTTGT
CTGCTGTTTCTCCAAACACTCCTGTCATGGAAGCATTCAACTTGGCTGATGATATTCTTT
GGCAAGGAATTCGTGGTATCTCTGATATCATCACGGTTCCTGGGCTGGTGAATGTTGATT
TTGCTGATGTGCGAGCTATAATGCAAAATGCAGGGTCATCTTTGATGGGTATAGGGACTG
CAACAGGTAAGTCAAGAGCAAGAGACGCTGCTCTTAATGCCATTCAGTCACCACTGCTAG
ATATTGGAATTGAGAGGGCTACAGGCATCGTGTGGAATATCACTGGAGGAACTGATTTGA
CTTTGTTTGAGGTAAATGCTGCAGCTGAAGTAATCTACGATCTCGTTGATCCAAATGCCA
ACCTGATATTTGGTTCTGTCATAGACCCATCACTCAATGGCCAGGTCAGCATAACATTGA
TCGCTACTGGCTTTAAACGCCAGGATGAAGCAGAAGGTCGCACCGCAAAGGGTGGCCAGC
AAATGCAAGGAGACAACGGTCGAGATCCATCTTCCACAGGTGGAAGCAAGGTGGAGATTC
CTGAGTTCCTTCGGAAGAGAGGACCGTCTCGCTTCCTGCGAATTTGACTCTTCCCCAGGA
TCCCTTTCTCAGATATGCCTGATGATACTTGCCCCTCGTAGATTAGATGCCCTCTTGTAA
GATACCAGATCGGTAGAGTCTAGTTGTTTTCCGTAGAGTTTTTTTTCCCATAGTTTTGTT
TGATCTTTCTGTTCTTTATCTTGGAATGTTACTGCCAATAATGTGTAGCTGTGAGCATGC
CAGTGTTGTAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_19581 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g44420.1	453	2e-159	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g09300.1	461	2e-160
Arabidopsis v10	AT3G52750.1	473	9e-136	\| Symbols: FTSZ2-2 \| Tubulin/FtsZ family protein \| chr3:19549841-19552435 REVERSE LENGTH=473