barSeed - Barley Seed Development Database

Probe CUST_18590_PI390587928

Source Contig U35_6847

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18590_PI390587928	Hv_44K_v2	GGCATGCAGGACAATTTTTTGGCACTATGCTATTCAATTCTGAACTTCCTAGGTAAAAAA	796	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.923	1.331	1.729	1.784	0.703	0.670
Raw	91.122	209.410	233.088	376.723	53.036	53.821

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79820.2	1134	9e-22	387 - 441	100	55 / 55	plus	None
MLOC	MLOC_79820.9	3111	9e-22	510 - 564	100	55 / 55	plus	ABC24015
MLOC	MLOC_79820.10	1161	9e-22	380 - 434	100	55 / 55	plus	ABC24015
MLOC	MLOC_79820.6	2266	9e-22	385 - 439	100	55 / 55	plus	ABC24015
MLOC	MLOC_79820.8	2393	9e-22	512 - 566	100	55 / 55	plus	ABC24015
MLOC	MLOC_79820.4	2209	9e-22	385 - 439	100	55 / 55	plus	ABC24015
MLOC	MLOC_79820.3	2833	9e-22	387 - 441	100	55 / 55	plus	None
Harvest35	U35_6847	867	3e-25	797 - 856	100	60 / 60	plus

Contig Sequence (867 bp)

>U35_6847 867 Hv_44K_v2
GATCGCCGCCACCTCCTCCCTTCCGATCGCCGTCGCCACCTCCCTCCGGCGGAGCTCCCC
GCCGTACATGGTCCGTCGGCCTCGTTCGTCGCCAGTCCCCAGTTCCCCACCACCACACCC
CGCCTGCGCTATTCCTGCGTGCGCTCGCGTCTCCCCTCGTGTCCTCCTCCCCCTCCCCAC
CACCGCGACGGGAACTCCTCGGCGAGCCGGGCCAGATCCGCCGGAGCAGTGGGCTCGCGT
CCGTCACCCGCATCGCTAACCCCCCCCCCCCCCCCCCCCTCCCGTCTCGCATCGGGCTCC
CCGCTGCCGGATGGAGAGAGGCAGGGCGTGAGATCAACCGATCGGCGCCCTCGACCGGAG
CGGACCCCGTCGAGGAGCCGCGAGCAAGTGAGCGAGCTCGATCCGACCGCGGGAGCGCCG
CGCCCACCAGATCGGGGATGGGATCCGGGCCAAGGGAGGAGGCCGGTGGTGATTGCTCGG
ATTCCATTTCTTCTTCCCGCGCGCGTGCGGATCCTCGATGGAATCGGCGCGGGCCGATTC
GGAGAGGGCCGGTGAGTGCTCCGCCTTCGCTGGAATTGTTCTCGTATCCTGTGCTCCATG
TCCAGTGTGATTTGGGTTGGATCCTCCAGTTCAAGACTCGACCCGCTGATCTAGGCTGCT
GCGGCGTCGTTGCAGGCGCCGGTGGTCGCTGCGGCTGCTTGGTTTAGGATGGTTATCATT
AAACCTCTGGGATCGAAGTGTGGATGGAGTGGTTACTGATGGAAGCTCCTGTTCTATTGG
TGTGTCTTGTGTTTCTGGCATGCAGGACAATTTTTTGGCACTATGCTATTCAATTCTGAA
CTTCCTAGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None