barSeed - Barley Seed Development Database

Probe CUST_18573_PI390587928

Source Contig U35_6865

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18573_PI390587928	Hv_44K_v2	CTTCATAGACCATGCTTGCTTGTTGGTGAAATTTTGGCTTGTTTCTACTGAGTGAAAAAA	725	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.239	1.219	1.238	0.846	0.272	0.265
Raw	11133.493	17646.257	15357.933	16641.613	1858.700	1983.927

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71601.1	2903	9e-22	1224 - 1278	100	55 / 55	minus	None
JLOC1	JLOC1_47600.1	2016	5e-22	235 - 289	100	55 / 55	minus
Harvest35	U35_6865	796	3e-25	726 - 785	100	60 / 60	plus

Contig Sequence (796 bp)

>U35_6865 796 Hv_44K_v2
AGTTGCTGTCCCTGGCTTGCTCGCCGTGTGGGACGGTGCTTGTTGCCGGATCTTCAAAGG
GAGACATTTTTGTGCGCAGAAGGAAGAAGAATGCAACGGAGGAGGAAGAAGAGGAGGTTG
TCAGCAGCGAGTTCGCTTGGACGACGCCCAAGCCAGAGAAGCAGGCGCTGAAGCCGAGCT
ACTACAGATATTTCCTCCGTGGTCAGAATGAAAAGGCCAAGCAGGGCGACTTCGTGATCT
CAAGGCCCAAGAAGGTGAAGTTCGCAGAGCACGACAAGCTGCTGAGGAAGTTCAGGCACA
AGGAAGCTCTGGTTTCAGCATTAGCCAAGAACAATCCGAGGAGCGTCGTGGCGGTCATGG
AGGAGCTGGTCGCGAGGAGGAAGCTGGTGAGATGCATCGGGAATCTTGACGTGGCCGAGC
TCGGGCTGCTCCTCGACTTCCTGCATCGCAACACGACCCTGCCGAGGTATGCAAGGCTGT
TGCTTGGGGTGGCGAACAAGGTCCTGGAGATGCGTGCTGAGGATATCATAAGCGAGGATG
GGGGAAAGCTGAGGGGGTGCGTCAGGAACCTTAAGCGGATGGTCATGGAGGAGATTCAGA
TACAGCACACCCTGCAGGAGATCCAGGGGATGATATCTCCCATGCTTGCGCTTTCTGCGA
GCAGATAAAAGAGAATTTTGTTACCTGTTTGGGCTGCCATAAGTGCTCGTGTATGTTCAT
TTATGCTTCATAGACCATGCTTGCTTGTTGGTGAAATTTTGGCTTGTTTCTACTGAGTGA
AAAAAAAAAAAAAAAA

Homology of Contig U35_6865 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g12320.1	534	3e-100	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g53790.1	532	1e-106
Arabidopsis v10	AT2G47990.1	530	1e-57	\| Symbols: SWA1, EDA13, EDA19 \| transducin family protein / WD-40 repeat family protein \| chr2:19637010-19638602 REVERSE LENGTH=530