barSeed - Barley Seed Development Database

Probe CUST_18571_PI390587928

Source Contig U35_6867

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18571_PI390587928	Hv_44K_v2	AGCCCCAAGTTATCTTGTAAAAAGGTTTCTTATGATAAGCGTGGAAAGCAACCTCTGAAC	1031	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27454.1	448	2e-24	345 - 404	100	60 / 60	plus	ABC14926
MLOC	MLOC_27453.2	469	2e-24	357 - 416	100	60 / 60	plus	ABC14926
MLOC	MLOC_27453.1	550	2e-24	438 - 497	100	60 / 60	plus	ABC14926
JLOC1	JLOC1_18533.2	489	8e-25	367 - 426	100	60 / 60	plus
JLOC1	JLOC1_18533.1	472	8e-25	350 - 409	100	60 / 60	plus
Harvest21	ABC14926	1120	3e-25	1032 - 1091	100	60 / 60	plus	ABC14926
Harvest35	U35_6867	1120	3e-25	1032 - 1091	100	60 / 60	plus

Contig Sequence (1120 bp)

>U35_6867 1120 Hv_44K_v2
AGAGATGTCGAAGCGAACTGGTCCCCCGAAGCACCAGAATAGCTACGCATGGAAGCCCAA
CCTCGGCCGGAAAATCAACGAGACCGAGCCTGGGGGCAGGTTCCGGCCTCTGTCGGAGAT
CACCGGCGTCTGCCAGCACTGCCGGGACCAAATCCATCCGCCGTTGACACCGTATTCTCC
TCCCGGCGGGATCCGGCCTCTACCACTATGCACAGGTGCGACGGGACGTTAGGATCCACT
ACTCTTTGGCAACCGCCCGACCTCCACGACTGTGCCTCGCCAATGCTTACTTACCGCATC
CAGCCTTTCATCGATATGGACTCGTGCTTCTCGGCCCCATGGTGTCGTGCTGGACGAGTG
CTCCACGGCCCCTCCTCCACGGTCTCGTATATTCGTATGGGACGGACGAGGGCGAGCCCT
GGGCATGGTTGCTGCTGTTCTGGCTGCCTGCTCAACGTTGACGGCGGCGGCAAGATCAGC
AGGCTTGAGATAATCGCGCTGCTCCCCTCCCCTCCCGACACGAGGATGAGAATGGCGCCG
TCGAGTTCAACGAGGTCACCCTCTCCTTCGCAGCTTCTCCTCTAACCTTGTCGCTGCCCT
ATCTATGCCGATCACTTGCAGGTCGCCGAGGCCTTCCGCACATTTGACCGAGACAGCAGG
TCAACAGAGGATACATCTCAACTGACCAGCTCGTGCGCTCCATGGTGCCATTACAAGTGG
CTGGAGGGATGGTGTATGCTCACAAGGTACATCAATCTCTTCTGCTCTATTGCGTCATGT
GCTCCACGCCTGTACCATATGACTCAGGAGTGCCCAGTGAAAAAATGTGTTATATTTGTA
GAGTCGATGTTCTCGGAGAGGGAAAATCATCCACGCAATGGTTTCCAGTCCTGTGAAAAC
TAAGTTGTTTAAAAATGGTCAAGTAAAGAAAGAAATCTTTCATGGTTGTGGGATTTAGAG
GATTACTAGCTCGCTATAATCATAGATACTTAATTTGTTTGCTTTTGAATTAAGTTTGGT
AAGGCGTATGAAGCCCCAAGTTATCTTGTAAAAAGGTTTCTTATGATAAGCGTGGAAAGC
AACCTCTGAACTTTTATATAGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_6867 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None