barSeed - Barley Seed Development Database

Probe CUST_18560_PI390587928

Source Contig U35_6878

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18560_PI390587928	Hv_44K_v2	TCAGAAGGAAGGAATATGCATATGCGGCAGCTCTTGTTAATGCACAGTTTGTGTATAAAT	1431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12766.7	1640	7e-23	485 - 544	98	59 / 60	minus	ABC14343
MLOC	MLOC_12766.10	1169	7e-23	15 - 74	98	59 / 60	minus	ABC14343
MLOC	MLOC_12766.8	1930	7e-23	237 - 296	98	59 / 60	minus	ABC14343
MLOC	MLOC_12766.9	1541	7e-23	237 - 296	98	59 / 60	minus	ABC14343
MLOC	MLOC_12766.2	1894	7e-23	973 - 1032	98	59 / 60	minus	ABC14343
MLOC	MLOC_12766.1	2379	7e-23	973 - 1032	98	59 / 60	minus	ABC14343
JLOC1	JLOC1_8579.3	1100	4e-23	794 - 853	98	59 / 60	plus
Harvest21	ABC14343	1491	3e-25	1432 - 1491	100	60 / 60	plus	ABC14343
Harvest35	U35_6878	1491	3e-25	1432 - 1491	100	60 / 60	plus

Contig Sequence (1491 bp)

>U35_6878 1491 Hv_44K_v2
GAATCGATCCGGAGCGGGCTCGCGTCAATTCCTCCAGGCGCGTATTAATCGCTCGGGAGT
CGCGGCCCGAGCTGCTCCGCCCGCGACCACCCCTCGGATCGATCCGGAGGCCGGAGGGGC
GACTCCCCCGCTGCATCGGCGATGCCGCACGACCGGGGCGGCGCGGCGTCCGCCGTCCCC
GCCTCCGAGGAGGACGCCCTGTTTATCGATCTACTACATGAAGCTCCCCTGTCGGGTCAC
AGGGAGCCCAGGAGCATAGTTAGTGGCACCTTGTATTGTATATTATTGGTAGGTTATGCT
GCTGTTTCCGTGTCAGCTCCATGGATATTTCTCCGTGTACCAGGCATGATCCCACCATTG
CTATGCAGCTCCAATGTTATCCTTCTACTTCTTACAGGCATTTTTCAACAATATTGGGTC
CATCAGGTTAGGAAAGTGAGGTTGCAGGGCTATTACGATTTCAGCCAGAAACTGAAGCAC
ATTGCTCGACTTCCATTTGCCACTGTTGCTTATGGCACTGCTTTAATGCTCTTAATCATA
GTTTGGCAGCCTTATGTACAAACACTATCGATTTCACTGTTGCTAAGGATTGCTATCGTG
GTTGAAGCAACATTTGCCGGATGCTTTATGAGCTTATACATATGGTATATCCATAAGTAC
AATTCTTTGGATGGGCGGCCTGATATATTGCGGTCATTATATTCTGCACTTCAACCATCT
ACAACGACTTTGGAAGATCGAAGATATTATGATGGCCGTCTTTCTGACCAGCAGATGGCA
TTACTTCAATACCAAAGGGAGAATATTCATTACCTGAGTGAGGAGGTGCTGCGCTTGCAA
GAATGCTTGAGCAAATATCAGAGAACTGATGTTGGGAACACTCCTCAGGTTGATCTTGTC
CATCTTTTAGCATCTCGTGACCAAGAACTTCGCGCACTCTCCGCCGAGATGAACCAAGTG
CACTCAGAGCTTCAGCTTGCTCGTGGCCTAATTGATGAAAAGGACTCGGAGATCCAGCGT
ATTCGTTTGAGCAATAATCAGTATGTTGAAGAAAATGATAGACTCAGAGCTATTCTTGGA
GAATGGAGTTCTCGAGCAGCAAAGCTTGAACGGGCACTGGAGGCAGAGCGACTGTCAAAC
ATTGAACTGCGGAAGAGCATTGCGAAATTCCGAGGCCAATTGCATAAGGAGCAACACGCC
TGATTCCCCTGTTCTAGGAATAGAATAGATTCATCTGGTGGTGTGTGTTAGCTGGTTAAC
GACTCTTCAGCTGCTGAAGGTTTCGCCCAGGACAACTGATCAAAGATGATCATCCATGTG
AGGTATTAGAACTACAAACCAGAAACCCCTGACTGTTGGCAGTTCAGGAGCATCAACAGT
TTCACTAAAAATTATAACATAGTACAAGATCAGTATGCTGCCTGATTTGCATCAGAAGGA
AGGAATATGCATATGCGGCAGCTCTTGTTAATGCACAGTTTGTGTATAAAT

Homology of Contig U35_6878 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53780.1	357	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi3g57210.1	355	0.0
Arabidopsis v10	AT2G06005.1	355	3e-136	\| Symbols: FIP1 \| FRIGIDA interacting protein 1 \| chr2:2332583-2336022 FORWARD LENGTH=355