barSeed - Barley Seed Development Database

Probe CUST_18555_PI390587928

Source Contig U35_6883

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18555_PI390587928	Hv_44K_v2	CTACACCTCCATCTGTATTCCATGCTAGAGATAGAAAGAAATCAGTTGTGAAATATTGAA	1790	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.988	1.410	1.552	1.585	0.506	0.542
Raw	169.235	392.115	360.155	586.683	64.573	76.580

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67407.1	1316	2e-24	156 - 215	100	60 / 60	minus	ABC14490
MLOC	AK371350	1926	9e-22	1817 - 1878	97	60 / 62	plus	ABC14490
JLOC1	JLOC1_44504.1	1414	8e-25	1187 - 1246	100	60 / 60	plus
Harvest21	ABC14490	2014	3e-25	1791 - 1850	100	60 / 60	plus	ABC14490
Harvest35	U35_6883	2014	3e-25	1791 - 1850	100	60 / 60	plus

Contig Sequence (2014 bp)

>U35_6883 2014 Hv_44K_v2
CAGCAGCACAGCAATGGCGACGCTCCTCCTCCCCTCCCACGCGGCCAGCCACCACCGACG
CGCCGTCTTCTCCGGCAGCGCGCGCCACCACCCGCTTCCTCTCCCGGACCTCCTCGGTGG
CGCCCTGCGCGCCGTCGCGGGCAGGAGGCGCCGGCCGATCGCGGTGGCGTGCCGGGCGGC
GTCAGCGGCGGCCAGGGCCAAGGCTCCCCCGAGCGCGAACGCGGGCCCGGCGCCGCAGGC
GCTGGCCAAGGAGGCGCACAAGTACTTCGACCACGCGGTCGTCAGCGTGCGCGCGGGCGA
CGGCGGCCACGGCGCCGTCCTCAACATGCCGCCGGGCACCTCCGCAGACGCGGCCCCCGC
CAGGCCCCGCGGCGGCGGCAGGGCCGCCGACAAGGGCAAGGCCAAGCGGGGCAGCGGGAA
GAAGGTGTCGTTCAAGCGGAACTACGACGGGTCCGTGTCGCTGCCCGTGGGCGGGCACGG
CGGCGACGTGGTGCTGTACGCCGACGAGGCGGAGGAGACGCTGCTGGGGTTCCACAGCAA
GGCCCGGCTCTGCGCCAAGAGGGGCGGCAACGTCGGGGCCACCGGCACCCTCAGCTCCCG
GATGCACAACGGCTTCGCCGGGGAGACGCTCAGGATACCCGTGCCTGTAGGTACCGTTGT
GAGGCGCAAGAAGGGGTCTGTTCTTGCTGATTTGGCCCACCCTGGTGATGAGGTGCTCGT
CGCCAGGGGTGGACAGGGCGGGATCAGCTTGATCGATGCGCCCGATTACAAAAGAGGGAA
AGCCATGGCTTTATCGCCTAATGTCATGCGTGATGTTACTGATAAGGTATTAACGCATGG
CCAGCCTGGTGAGGAAATAAGCTTGGAATTAATCTTAAGGGTGGTTGCAGATGTTGGCCT
AGTGGGACTTCCAAATGCTGGAAAATCAACACTTCTATCAGCTATAACACTTGCAAGACC
AGACATTGCGGACTATCCATTTACTACATTAATGCCAAATCTTGGCCGGCTTGGTGGAGA
TCCCACTTTAGGGGCGTTGCAGTTTTCCTCTGGAGCAACATTGGCAGATTTGCCAGGTCT
TATTGAGGGCGCTCATCTGGGCAAGGGTCTTGGTCGCAATTTCTTGAGACATTTGAGGAG
AACGAGAGTAATCGTCCACGTCGTTGATGCTGCTGCTGATGACCCTGTTAATGATTATAA
GATTGTCAGAGAAGAATTAAGGATGTATAACCCCAAATACCTGGAGCGACCTTATGTTGT
GGTTCTGAACAAGATTGATCTTCCTAAGGCCCAAGATAGGTTATCTTCATTAGCACTTGA
AATATCTTCAGTAGGCTGTGAAGAAAGCCACGACAAAAATGCCAGCAAAGAAAAGCTAAA
TGTAAACTTCAACAGACACCATATGTCAGAAGACGATGATAAGGAACTTGGGGACTATCC
AAGACCTCAAGCTGTAATCGGTGCAAGCGTACTAAGGCGCATCGGGATCGACGAGATGCT
GAAGGAGATCAGGACAGCCCTGGGAAAATGCTCAGATCACATGTTACCAGGACCATGAAT
CTGAAAGTCTGCACGCTGGAGCCCTTAACATCAGTCCAACACCTGGAAAGGATCGAGCGG
GATCGATTGGTTCTTCAACAACAGCGGCAGTCGAGTCTGTCCTTGGCTCGTGACGGCGTT
AGCAATTCCTGGAGGACAAAAACTACCAGTTTGATTGTCCAAAATCCTATTGCGGAGCGC
TTCAGTGTCTGCCGCGTTAGCTTGAGGACGAGCAGTTGCAGATATCCAGACTACACCTCC
ATCTGTATTCCATGCTAGAGATAGAAAGAAATCAGTTGTGAAATATTGAAAAACTAATGA
GGACTCATATATATACTCCGTATTTGTCTGCACGTATTAGTGAAGATTTGAAAATCATAT
CTTCCGTACTAAATAAATGACTAGTAGAAATTCGTCTATATGAATGACTCATTAATTGTT
CTCTCTGCTTTACTTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_6883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58540.1	505	0.0	protein\|spo0B-associated GTP-binding protein, putative, expressed
Brachypodium v1_2	Bradi1g05240.1	510	0.0
Arabidopsis v10	None