barSeed - Barley Seed Development Database

Probe CUST_18554_PI390587928

Source Contig U35_6884

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18554_PI390587928	Hv_44K_v2	TCTGAACGGATTAGACGAGAAATTGTTGTCAGCTCATTATACGAAATCCATGGACCTTGT	826	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.486	2.657	1.204	0.806	0.344	0.534
Raw	373.430	442.710	181.005	185.789	28.622	47.856

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62150.1	894	2e-24	724 - 783	100	60 / 60	plus	ABC19347
JLOC1	JLOC1_40649.1	832	8e-25	576 - 635	100	60 / 60	plus
Harvest21	ABC19347	872	3e-25	810 - 869	100	60 / 60	plus	ABC19347
Harvest35	U35_6884	889	3e-25	827 - 886	100	60 / 60	plus

Contig Sequence (889 bp)

>U35_6884 889 Hv_44K_v2
GTGCCTAATTAGACGTCGGGCGACTTGACCGCTTACGCCGCCGGTCGCTCTTGCTCTCTC
GCTTCGCCGCCGGTCGCCCGAGACGAGAGTGGCCGCCGCCTGAACTCGCTCTACCTGCTG
TGCTTAGCCGACCGTCGATGGGCCAAGACCAGAGCCAGCCCGGACCCGCGGTGGAGGAGC
CTTCTCCGCCGGCCGCCGACCCGGCACCGTCGCCGTCGCCGTCTCCTGCCCCCGCACCCT
CCTCCCTCGAGGAGCTCGCCGCAGAGGCTATGTCATTTAGTGAGGATGATGAGTCAATTG
ACGTTAAGGTACAGAAAGCTCTGGATTGTCCGTGTGTGGCTGATTTGAAAACTGGACCTT
GTGGCAGTGGATTTGTTGATGCATTTTCCTGCTTCCTGAGGAGCACAGAAGTAGAGAAGG
GATCAGATTGTGTGCAGCCCTTTATCGCGCTGCAGAACTGCATCAAGGAGAATCCAGCGG
CATTTTCTAAGGAGATATTGGAAGAGGAGGAGAAGGACGAGGAGGCTGAGAAGTCTGACC
TGAAAGTTAGAGCTCCAGCATGGTCTAGAGAATCCAAATCCAAACCAAAGCTTTGAGATC
CTGTGGTATTAAGCTGACAGCCTGATACAGAGATTGCCCCGATTCACACTCTTCACCTTG
TTTCTCCTATAAATTCTTCCGTTATAGGCAAGATTAAGCATCCAGGATTTTATGGCAGGC
ATAAGCACAGTTTGCGTGGCAGAAATATTTCCACACTTTTTTTTGGAATACATTACACGT
TATTGAAATGAGAAACTGGAAAACATGTATTCTAGAGACTTCAGTTTCTGAACGGATTAG
ACGAGAAATTGTTGTCAGCTCATTATACGAAATCCATGGACCTTGTTAA

Homology of Contig U35_6884 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None