barSeed - Barley Seed Development Database

Probe CUST_1853_PI390587928

Source Contig U35_31803

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1853_PI390587928	Hv_44K_v2	AAGCAACTGCTCTTGAAGTTAGAGCTACCGGGATTCCATACGTCTTTGCTCCATGTATTG	548	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56792.1	2355	2e-24	819 - 878	100	60 / 60	plus	ABC03391
JLOC1	JLOC1_36763.1	2412	8e-25	730 - 789	100	60 / 60	plus
Harvest35	U35_31803	609	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (609 bp)

>U35_31803 609 Hv_44K_v2
ACGCTCGCTCGCTCGCCCTTCTCACCATTCTCAGGCAGCTCTCAGGCTGCTGAGTTCATC
TTGCTGCTGCGGCAAGGTCTACATATAGTCAGACAAGATGGGGAGTGTGCACAAGGCCAC
CTTTGTTCTCTTCATGTTCTGCTTGGTCGTGCTGGGAAGAGCAGAATATCTCAAGTACAA
GGACCCGAAGCAGTCCGTTGGTGTTCGCGTCAAGGATCTGCTCGGCCGGATGACTCTCGC
GGAGAAGATCGGCCAGATGACGCAGATCGAGAGGGAGAACGCCACGGCGGGGGTGCTATC
CAAGTACTTCATCGGTAGCGTGCTGAGTGGTGGAGGCAGCGTGCCTTCTTCTAAGGCATC
CGTTGCGGCTTGGCAGTCAATGGTGAATGAAATGCAGAAGGACGCCATGTCCACCCGCCT
GGGTATTCCGATTATCTACGGTATTGATGCTGTGCATGGTCACAACAACGTCTACAAAGC
CACTGTCTTCCCCCACAATGTTGGTCTCGGAGCTACCAGGGACCCTGAGTTGGTGAAGAG
GATAGGGGAAGCAACTGCTCTTGAAGTTAGAGCTACCGGGATTCCATACGTCTTTGCTCC
ATGTATTGC

Homology of Contig U35_31803 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53800.4	626	2e-82	protein\|periplasmic beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g08560.1	625	8e-83
Arabidopsis v10	AT5G20950.1	624	1e-64	Glycosyl hydrolase family protein \| chr5:7107609-7110775 REVERSE LENGTH=624