- Probe CUST_18531_PI390587928
- Source Contig U35_11082
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18531_PI390587928 | Hv_44K_v2 | AATCACAGCTGGTTGGACAAACTCAGCCTGTGTCAGTGCAAGAAAAATCCAACTTGGACA | 574 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.602 | 1.355 | 1.116 | 0.796 | 0.245 | 0.239 |
| Raw | 236.039 | 307.214 | 221.731 | 257.768 | 27.402 | 29.052 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_18047.1 | 1235 | 2e-24 | 610 - 669 | 100 | 60 / 60 | plus | ABC22164 |
| MLOC | MLOC_18047.3 | 1356 | 2e-24 | 573 - 632 | 100 | 60 / 60 | plus | ABC22164 |
| MLOC | MLOC_18047.2 | 1238 | 2e-24 | 610 - 669 | 100 | 60 / 60 | plus | ABC22164 |
| JLOC1 | JLOC1_12476.2 | 1234 | 8e-25 | 392 - 451 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_12476.1 | 1351 | 8e-25 | 506 - 565 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC21966 | 657 | 3e-25 | 575 - 634 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11082 | 657 | 3e-25 | 575 - 634 | 100 | 60 / 60 | plus |
Contig Sequence (657 bp)
>U35_11082 657 Hv_44K_v2 GGCCTAGTGCAATTGAAAGGCTACCCTTCACGCAAGAGATTCTCCCAGAGTATCATTCTT GCTCCTCAGATCAAACCAGATGGATTTTATGTAGACAGTGACATCTTTCAGCTCATCTGT GATGAGTATGATGAGCATTACCAAGTTGCTGATTACGGTTATGCTAACCAATTTCCCCAG ATGGTTGCTCATAATACTATGACCGAAACAGCATCTGATTATGTGTCTGAAGAACTTGAA TTAAAGGGGTTTGCAGCTCCTGCTGATTCCGACGAAAGGGGTAATGGTATTATATATGAG AATCATGAAATGCAGCAGCAAGATCCTTTGGAATTTGAGTCTGCAATCAATGGAGAAACT CATTTTGATGATCCTGCTCCCTCCCTCCCTAGTTCGACAGACATTAAACAGGATGCATCT CTTGCTCCTCCCCACCCTCCTTCCCCACCTACACCTGAAGAAGAGCCTGTGGGAGAACCG CCTAAGCAAACATATGCTTCAGTGCTGCGAGCAAATGCTGGTCATCAGGTTATGCACTCC ACTCAGGTTAACAGGGCTATGCCAGGGACTGCAGAATCACAGCTGGTTGGACAAACTCAG CCTGTGTCAGTGCAAGAAAAATCCAACTTGGACACTCGTCAGGATGTCAGTGTCCCT
Homology of Contig U35_11082 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g43150.1 | 373 | 2e-62 | protein|nuclear transport factor 2, putative, expressed |
| Brachypodium v1_2 | Bradi5g15390.1 | 446 | 8e-78 | |
| Arabidopsis v10 | None |