- Probe CUST_18528_PI390587928
- Source Contig U35_47012
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18528_PI390587928 | Hv_44K_v2 | GCTGATGTATCGTGTTACAAGTAAAATTGGAAGTCATTTGCCAGGAGCTTCCCCAAAAAA | 11 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.412 | 2.129 | 1.930 | 1.569 | 0.684 | 0.678 |
| Raw | 3.858 | 40.687 | 33.393 | 43.899 | 5.933 | 6.297 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC47779 | 324 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC47779 |
| Harvest35 | U35_47012 | 324 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (324 bp)
>U35_47012 324 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGGGAAGCTCCTGGCAAATGACTTCCAATTTTACTTGTAACAC GATACATCAGCTTGTTCAATTGATGCCTCATTATTCCCGCATAGATGATTACCTTTGTGA CACATACTCGATCACTTAGTCTACTCAAATGAAATGCTCCGGTTAATGGGGATGCTGACA CTGAAGAATACTAGTGCTACATTGCCTTCTCTGCTACGCCGATCTTGATTTCTGGTGCTT CTTTTCTTGCCTTGCGTCTCTTGTCCTGGAGGAACTCCGTCAGCACCCGTAGCGCAACGT CGGCGTCTTCGCTCCGCAGCAGCA
Homology of Contig U35_47012 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |