barSeed - Barley Seed Development Database

Probe CUST_18523_PI390587928

Source Contig U35_47015

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18523_PI390587928	Hv_44K_v2	GAAGTGAGCTAGGACTTCTGCCAACAATGGTTATATTTTCTGTTCTTCTCTGATCCTACT	3	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.744	1.560	1.100	0.807	0.206	0.268
Raw	87.173	127.857	76.717	92.758	7.886	11.024

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC47783	568	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_47015	568	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (568 bp)

>U35_47015 568 Hv_44K_v2
TTCAGTAGGATCAGAGAAGAACAGAAAATATAACCATTGTTGGCAGAAGTCCTAGCTCAC
TTCTACTTCAATGAATACATATCCCTTTTTCCACAGAAATAAGTCAAACAGATATCCAAC
AACTTAGCAAATACTGAACTGTATACGGATTGCTGGCATATAACACACATACTTCCATGT
GTTGCTAGAAGTGTTTAGTAGCATGCTGAAGTGGTGGGTAAGGCGATTTAAATGGATCAA
TTCATACTGGTTCTCCTGAGATTGCTGCCTCAAGTACTGTGCAAAGAAATTAGGCTCTGA
AGTTCCTTTGCGGTCTCATGCCTTAGGAACTGGAACACTGACATTTCAAGGATGCTGAAG
GCAGAGCGTGAACGTCTCCTGGCATGCTTCGTATAGCAATCATGTTCTGCTGATTCTTTG
GGAAGGAATGACACTCTGAGCACAGCGCAAGCTGGTCTTCAACAGGATCCACTACAACAC
GCATATAATCAAAAAGTCTGTCCAGCATCCCATATATCTCATTCGCCTCACAGTGAGATG
TGTCATCAGCAACAAACATGTGCTTCGC

Homology of Contig U35_47015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None