barSeed - Barley Seed Development Database

Probe CUST_18516_PI390587928

Source Contig U35_23060

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18516_PI390587928	Hv_44K_v2	GGAATTTGTAAGGATTATCCCGGTCAAACCCCTTAATCCCACACATCCCATAACATCAAA	1214	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372823	1317	2e-23	1239 - 1296	100	58 / 58	plus	ABC23507
JLOC1	JLOC1_38834.2	1427	1e-23	1335 - 1392	100	58 / 58	plus
JLOC1	JLOC1_38834.1	1527	1e-23	1435 - 1492	100	58 / 58	plus
Harvest35	U35_23060	1288	3e-25	1215 - 1274	100	60 / 60	plus

Contig Sequence (1288 bp)

>U35_23060 1288 Hv_44K_v2
GCCACTCCGGCGGCAGCCGCCGACACCGCCGCCGCGACGCTGGCTCCAGTTGCCCCGGAG
CCCGCGGCGAAGGTCTCCGTTGCTCCTTCTGATATGGCTGCTCCGACCGCGGCAGCCGAC
ACCTCCGCCCCGCCGCCGCCTGCTCCAGCCCCTCCGACCGCAGCCGCCGACCCCGCCGCC
CCGCCGCCGCCTGCTCCAGCCCCTCCGACCGCATCAGCCGACACCGCCACTCCGCCACCT
CCTCCCCTAACAGCTACAGAGCCTGCGGCGAAGGTCTCTCATAATACTTTCCACATGGCC
CCTCCGACGGCAACCGCCGAGACCGCCGCCCGGCCGATTCCTCCTCCTCCAGCCCCAGGA
CTCGCGGCCCAGGTCTCCCATTTCCCCCCTCCTTTTCCTCATCAGCCCGATGCGCCGGCG
CCGAAGAGGCGGAAGCTGGAGGAGGCGGGGTTCCACACCTCCGCTTACTACAAGATCCGG
GCCACCGTTGCCGACCTGCGCCTCCGCTTCGTCCAGGTTCACGAAGCTACTGATTTCCGA
AAGAGTGATGCTGCTGGCGAGATTCTGAGAGAGATAAAGACAGTCATGGAACTCTCCAAG
AAAATGAGGCTTGATCTCAGCGCCTCTTCTGAACCCGTGAAACTAGAGAAGCCGTTGGCT
GGAGCCGTGAAGGACGGACTCACAGAGCAGATTCCTTCATCTGGAGAAAGAAATCAAGTT
CCTCGGACAGGTCAGCCTGCAGTTCCTCCTAATATCGCAAATGATGGTGCACCGGCCACC
CAAAAGTGATGATAACTCAGGGAGCACAGCAGAGGAAATAGCAGAGGGATGGCAAATCAC
CCAAAGCACCTCGCGGAAACAGTGCAAGGGTCTTATGTGGTTGGTGGATCTCCTGTTGGC
TGGAATTTTCCTGTTTGGCTTGGCGATAAAATAATGTATTATGGGTTGGCCAAGGATGTC
TTTCGGACGCGCCAAGCTGCAAATTGAGATGTTCTGCTCACGTTGAAACATTCTGATTTG
TTTTTTAACATCCTTAAATTCACTAAGCTCCGTAGGGGCTGGGGCTCTCTTGATGAGGTA
TCAATTTTGGATCTGGCCTTCGATTTTTTTTTTGAGTCGCTTAGGCCTTTTGGAGGAGAT
TAGTGGGGATAATCCCCCTAGGGATTGGGTGAAACCCCAACCTTCAGACCTTGTTTGGTA
TTAGTGTATTTTAGGGAATTTGTAAGGATTATCCCGGTCAAACCCCTTAATCCCACACAT
CCCATAACATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_23060 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44540.3	210	1e-53	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None