barSeed - Barley Seed Development Database

Probe CUST_18515_PI390587928

Source Contig U35_23061

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18515_PI390587928	Hv_44K_v2	TAGAAGCACAGAATAACAAAAAGGCGACCATGGAGGCTATAGCTACCGATGCAGAGAAGA	451	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.604	1.129	1.236	0.898	0.566	0.597
Raw	406.135	389.905	423.915	454.269	108.205	124.743

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362409	1852	2e-24	631 - 690	100	60 / 60	plus	ABC13117
MLOC	MLOC_13285.1	885	2e-24	276 - 335	100	60 / 60	plus	ABC13117
MLOC	MLOC_13285.2	997	2e-24	276 - 335	100	60 / 60	plus	ABC13117
JLOC1	JLOC1_8976.2	1110	8e-25	276 - 335	100	60 / 60	plus
JLOC1	JLOC1_8976.1	1134	8e-25	276 - 335	100	60 / 60	plus
Harvest21	ABC19437	563	8e-21	512 - 563	100	52 / 52	plus
Harvest35	U35_23061	562	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (562 bp)

>U35_23061 562 Hv_44K_v2
CAGGAGCGAGGCCACGAGGCGAGCACTCCTATTACGCTCCTCCCATCTTCCTCGGCCCCG
TGGCCCGTGCACTTCACCATCTCCACCTGCGAGATGCGGATCCCGGGGCTGCTCGCGGCG
GCGGCGGCGCTGCTGGTGCTGCTTCTCGCGGTCGCTGGTGCGGCGGCGCAGGAGGCGGCG
GCGGCGGGGGACGTGCGGCCGGAGGAGATCGCGGCGAAGGCGACGGCCAAGGAGGAGGCG
GTGCTCGCGGCCGAGCTGGGGCAGCTCAGGGCGAAGGTCGCCGCGCTAGAGTCGAGCATT
GCAGCGCAGACACAGGAGCTGAATAGCAAGGATGGCGGCATCGAAACACTGGAAAAGTCA
AAGGGATCTATAGCTGCAAAGGAGCTGGCAGGCAAGGCCAGTGCCCGAGCTATTGAGCTT
GAGAAGCAGATTGAGAAGCTCAAGAAGGACATAGAAGCACAGAATAACAAAAAGGCGACC
ATGGAGGCTATAGCTACCGATGCAGAGAAGAGGGTGCAAGAGCTGAGTGCTAAGCTTGAT
AGACTTCAGAAGACAAGTGGCG

Homology of Contig U35_23061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None