barSeed - Barley Seed Development Database

Probe CUST_18508_PI390587928

Source Contig U35_23068

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18508_PI390587928	Hv_44K_v2	TATTGGAGAACAGGTGCTGTTGCGAAGATTCCAGATCACTCGCAATCTTTCATTGGATGG	982	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.753	1.112	1.183	0.652	0.276	0.344
Raw	104.486	97.191	97.022	83.151	12.662	16.976

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48709.1	3123	2e-24	1169 - 1228	100	60 / 60	minus	ABC15436
JLOC1	JLOC1_31254.1	3183	8e-25	1899 - 1958	100	60 / 60	plus
Harvest21	ABC17146	1051	3e-25	983 - 1042	100	60 / 60	plus
Harvest35	U35_23068	1051	3e-25	983 - 1042	100	60 / 60	plus

Contig Sequence (1051 bp)

>U35_23068 1051 Hv_44K_v2
GGTTTTCTAACGGGGTGTTTGGGCTGTACCAGATGCCGGACTTTGTGTGCCACTGCCAGC
TCTCAATATCAAGGGAGAAGATCACCACAGCTATTTTCAACAGCTTGGGGAATTGGCTAG
TTTTTGGGTGCGCCAAACTTGGCCAACTGCTGGTGTGGGAGTGGCGGTCAGAGAGCTACA
TTTTGAAGCAGCAGGGTCACTACTTCGATGTCAACTGCATTGCATACTCACCAGATTCTC
AGTTAATTGCTACTGGAGCTGATGATAACAAAGTCAAGGTCTGGACGGCTGCCTCTGGGT
TCTGTTTCATAACATTTTCCGAGCATACAAATGCTGTTACTGCAGTTCATTTTATGGCCA
ATAACCATTCTCTTCTCAGTGCCTCCCTTGATGGGACTATTCGAGCATGGGATCTGTTCC
GTTATCGTAACTTCAAGACATTTACGACCCCTTCACCTAGACAATTCGTTTCTTTAACGG
CAGATCAGAGCGGGGAAGTAATTTGTGCTGGAACACTTGATTCATTTGAGATTTATGTTT
GGTCAATGAAGACTGGTCGTTTGTTGGATGTGCTCAGTGGCCACCAAGGACCAGTTCATG
GTTTAATGTTTTCACCAATCAGTGCTATTTTGGCTTCATCATCATGGGACAAGACCGTTC
GTCTTTGGGATGTATTTGAGAGCAAGGGTGCTGTGGAAACGTTTCAGCACTCACATGATG
TTCTTACCTTGGCTTATCGTCCTGACGGAAGGCAGATTGCATGCAGCACACTAGATGGCC
TAATCAATTTCTGGGATCCCTTTGATGGCTTGTTGATGTATACAATTGAAGGCCGCAGGG
ATATTTCTGGCGGGCGGCTCATGACTGATAGAAGATCTGCAGCTAATACGAGTATAGGAA
AGTACTTCACGACGCTGTGCTATTCTGCTGATGGAAGCTATATTTTAGCAGGAGGAAACA
GCAAATATATATGCATGTATGATATTGGAGAACAGGTGCTGTTGCGAAGATTCCAGATCA
CTCGCAATCTTTCATTGGATGGCGTTCTTGA

Homology of Contig U35_23068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g44320.3	773	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi2g19560.1	882
Arabidopsis v10	AT1G15440.1	900	\| Symbols: PWP2, ATPWP2 \| periodic tryptophan protein 2 \| chr1:5306159-5309460 REVERSE LENGTH=900