barSeed - Barley Seed Development Database

Probe CUST_18498_PI390587928

Source Contig U35_11090

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18498_PI390587928	Hv_44K_v2	CTGCCACTGCAACAGATGCTTCTTTTATGTTGAAGAAATACTATATGTCGCTGTTATACC	476	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42821.3	1782	7e-23	519 - 578	98	59 / 60	plus	ABC16224
MLOC	MLOC_42821.2	784	7e-23	408 - 467	98	59 / 60	plus	None
MLOC	MLOC_42821.1	1663	7e-23	418 - 477	98	59 / 60	plus	ABC16224
JLOC1	JLOC1_27680.3	2563	4e-23	412 - 471	98	59 / 60	plus
JLOC1	JLOC1_27680.2	1921	4e-23	420 - 479	98	59 / 60	plus
JLOC1	JLOC1_27680.1	1797	4e-23	420 - 479	98	59 / 60	plus
Harvest21	ABC26402	604	3e-25	477 - 536	100	60 / 60	plus
Harvest35	U35_11090	605	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (605 bp)

>U35_11090 605 Hv_44K_v2
CAGTTTCTCTTTACCGATCTATAGCGGTATTTTATCATCGCTAACCTTACAGTAATCCAT
CCGGCGAAAACCTAAAGCAAAAGTAGGAGCAAAATATTCGTCCTGTCCTAGTTAAGGGGA
TATGAGGGCAGCGTCGGAGATGTTCGTTGTGGATGCTGCCGCTGCGGCGGATAAAGGTAA
GGAGAAGGTGGAGGAACCGGTGCCAGCGGCGAGAGCGGCGGGGTGCGGAAATGGGAGGTT
CATGGCGTACCCGGCGCGGATGGCGGAGCACAAAGGCGTGGTGACGGACGCCGCCATCTT
CAGGGCTGAGCTCGAGAAGCTGCACGCGCACATGGGCACAAAGCTCAAGGTGCCAATTAT
TGGTGGAAAAGACCTGGATCTTCATCAACTATTTAAGGAAGTTACGTCACGAGGTGGCAT
TGATAAGGTCAAGGCAGAAAACAGATGGAGAGAAGTAACCGCGTCATTTCTTTTCCCTGC
CACTGCAACAGATGCTTCTTTTATGTTGAAGAAATACTATATGTCGCTGTTATACCATTT
TGAACAACTATACTTCTTTGGAGCACANNGGCTGGTATCAACAGAAACTGATAACAGATC
ACTGC

Homology of Contig U35_11090 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g27060.2	468	7e-59	protein\|high mobility group, putative, expressed
Brachypodium v1_2	Bradi3g43310.1	444	4e-68
Arabidopsis v10	None