barSeed - Barley Seed Development Database

Probe CUST_18497_PI390587928

Source Contig U35_11091

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18497_PI390587928	Hv_44K_v2	AACTCAAGAAGTTGGAAGAGGAAAAGGGAGTCGTCATCCGATTCATGATTGGGCATAGTC	566	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.630	1.381	2.640	1.757	0.908	0.828
Raw	4.534	17.647	32.147	29.115	5.259	5.295

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13941.2	1777	2e-24	984 - 1043	100	60 / 60	minus	None
MLOC	MLOC_13941.3	1779	2e-24	984 - 1043	100	60 / 60	minus	None
JLOC1	JLOC1_9487.2	1747	8e-25	599 - 658	100	60 / 60	plus
JLOC1	JLOC1_9487.1	1566	8e-25	418 - 477	100	60 / 60	plus
Harvest21	ABC26365	634	3e-25	567 - 626	100	60 / 60	plus
Harvest35	U35_11091	634	3e-25	567 - 626	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_11091 634 Hv_44K_v2
TCGGCTCCTCGCTCCTGCCCAGCACAAGCACAGGCAGCGCACCACGCGTTCCCCGGACCA
GCCAGCTCCAGCCGATAACATCACGTACCACGCACAGAAGATGAAGGCCAAGAGCGGCGG
CGCCGCCGCCGGGGAGAGGAGGCCGGTGCTGTCGAGGACGATACTGCTCCTCTGCGCCTG
CAGCTTCGGCCTCGGCATGCTCTTCACCGACCGGTTCGGAGCGATGCCGGACCTGAAGAG
CCCGGTGGTGGCGCAGCGGCGGCGGCAGGAAGAGGAGCTGCAGGTCGTTTCTGAAGACTT
TGTTGCCAAGACGAAACCATCTGACGACAGGGACGTGATGGGGGAAGTCGCGAAGACTCA
TGAGGCCATACAATATTTAGACAAGTCGATCGCCACGCTACAGATGGAGCTGGCAGCGCG
GCGCAGCAAGCATGAGCTGCTTGAGAGTGCGGATGGCGTGATGCAGGACAGGAAGAAGGC
TTTTGTGGTGATCGGGATCAACACCGCCTTCAGTAGCAAGAAGCGACGGGATTCTGTCAG
GGAGACCTGGATGCCTCAAGGCGAGAAACTCAAGAAGTTGGAAGAGGAAAAGGGAGTCGT
CATCCGATTCATGATTGGGCATAGTCCGGCATCG

Homology of Contig U35_11091 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g27950.1	394	3e-68	protein\|galactosyltransferase, putative, expressed
Brachypodium v1_2	Bradi4g31890.1	399	1e-80
Arabidopsis v10	None