barSeed - Barley Seed Development Database

Probe CUST_1847_PI390587928

Source Contig U35_17513

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1847_PI390587928	Hv_44K_v2	CATTGATGTTGTTTAGTACTCCCTCCGTTTTATAATATAAGGCCTTGTTTGGTTCCAAAA	1030	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.293	1.445	1.011	0.844	0.908	1.094
Raw	44.354	69.409	47.441	55.315	22.184	30.597

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73682.1	380	6e-24	5 - 63	100	59 / 59	minus	ABC19503 ABC28834
MLOC	AK360522	511	3e-22	456 - 511	100	56 / 56	plus	ABC19503 ABC28834
JLOC1	JLOC1_49057.1	361	3e-24	16 - 74	100	59 / 59	minus
Harvest21	ABC28834	169	3e-25	97 - 156	100	60 / 60	plus	ABC28834
Harvest35	U35_29522	169	3e-25	97 - 156	100	60 / 60	plus
Harvest35	U35_17513	1123	3e-25	1031 - 1090	100	60 / 60	plus

Contig Sequence (1123 bp)

>U35_17513 1123 Hv_44K_v2
TCGAGCACTGTTGGCCTGACACTCGTCAGTGGTCATAGTTCATCACTGCACAGCTCTCCC
ACTCCACTGCCCTCACTCCCACGCCGACACTCGCCATAATGCGCCGCCTCCACCTCGCCG
CCGCCGTCCTCGCCGTCATCGTCCTCCCCCTCGCCGTCTCCGCGGCCGGGGGCAAAGCAG
CGGCAGCTAAGGCGCCCGCTGCTCCGCCGGCCCCGCCGAACATCACGGCGGCGATGGCCA
AGGGCGGGTGCAAGGCGTTCGCGGCCCTGGTGGCGGCCTCGCCGGACGCGCACTCCACGT
TCCAGTCGGCCGGGGACGGCGGCGTGACGGCGTTCTGCCCCAGCGACGACGCCGTGAGGT
CCTTCATGCCCAGGTACAAGAACCTCACCGCCGACGGCAAGGCGTCGCTGCTGCTGTTCC
ACGCCGTGCCCGTGTACTACGCGCCGCGGAGCCTCAAGTCCAACAACGGCGTCATGAACA
CGCTCGCCACCGACGGCTCGGCCAACAACTTCAACCTCACGGTGCAGAACGAGGGCGAGC
AGGTGACCATCAAGACGGACGCCTCCGACCACGCCGCGCGGGTCAGGTCCACCGTGTACG
ACAAGGACCCCATCGCCATCTACGCCGTCGACACGGTGCTCGAGCCGGTGGAGCTCTTCG
AGCCGGCAGACTCCCCGGCGCCGGCGCCGGCTCCCGCCCCTGTCGCGGACGCGCCCAAGG
CCCCCAAGAAGCAGGCGCGCCACCGGCCTGTAGCGGACGCGCCCGGGCCGGCCGCCGAGG
ACGCGGCGCCCGCCGACCAGAGGAAGAACTCTAAGAAGAGCGCGGCGTCCGGCGCTTCGT
GTCTGCGATGGGCCGCAGTCCTGCCGTTCGCCGTGGCCGTGGCCGCCGCTCTGGCTTAGC
CAAAGGGTTGTGGTGGATCTGTACGGGAGGTGGTGGTGTGTCGGTGGATTGCGTTGCGCG
TGTCCTTTGTGTCTGTCGGTCAGTGCGTGTGCTCCTGCAGTGAAATTTCTATCTTTACTC
TTTCTTGCCACATTGATGTTGTTTAGTACTCCCTCCGTTTTATAATATAAGGCCTTGTTT
GGTTCCAAAAAAAAAAAAAAAAAACCTCGAGGGGGGCCTAGTA

Homology of Contig U35_17513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38270.1	272	2e-84	protein\|fasciclin domain containing protein, expressed
Brachypodium v1_2	Bradi3g39010.1	269	8e-73
Arabidopsis v10	None