barSeed - Barley Seed Development Database

Probe CUST_18479_PI390587928

Source Contig U35_47029

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18479_PI390587928	Hv_44K_v2	CAGATAATGTTTGAGGTGAATTCCTTCACCTGCCCTGCTTATGGGAAATTCTGCAACGAT	333	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.964	1.568	1.234	0.700	0.632	0.423
Raw	21.770	51.718	36.735	33.770	8.975	7.152

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60497.2	1529	2e-24	993 - 1052	100	60 / 60	minus	ABC47807
MLOC	MLOC_60497.1	1983	2e-24	1067 - 1126	100	60 / 60	minus	ABC47807
JLOC1	JLOC1_39456.1	2004	8e-25	858 - 917	100	60 / 60	plus
Harvest21	ABC47806	666	3e-25	334 - 393	100	60 / 60	plus
Harvest35	U35_47029	666	3e-25	334 - 393	100	60 / 60	plus

Contig Sequence (666 bp)

>U35_47029 666 Hv_44K_v2
CACTCGCAGACGTTAGGGAGATTGTATGCCTGGGAGAAGAAACTGTATGAAGAAGTTAAG
GCCATAGATCAAATTCGACAAACATATGAGAAGAAATGTGTGCAGCTGAGGAACCAAGAT
GCCAAAGGTTCGGAGCTGCGCTGTGCTGAGAAAACCAGGACAAACGTGAGAGACTTGTAC
ACAAGGATCTGGGTTTCTCTACGAGCAGCAGAATCGATATCCGATAGAATACAAAAATTA
CGGGACGAGGAACTGCAACCGCAGCTTGTTGAGTTGTTGCACGGCTTTGTGAGAACTTGG
AAAGTAATGGTGGATTCTCATGATGCACAGAGACAGATAATGTTTGAGGTGAATTCCTTC
ACCTGCCCTGCTTATGGGAAATTCTGCAACGATGCCCAGCGGCACGCCACTCTCAAGCTG
GAGGTTGAACTGAGGAACTGGAGGTCCTGCTTTGTGAGCTATGTTACTGCACAGAAAGGC
TACATTGAAGCCCTTGACGGCTGGCTGTCCAAGTTCATCCTGACGGACACAATCCGTTAC
TCCCGAGGGATCTCCTCGATCGCGCCCGACAGGGCTGGCGCGCCGCCCTTAGTCGTGATC
TGCCATGAGTGGCACACCACGCTGTCGAGGTTCCCGTACAAGCGGGTGCCATTTACCATG
CGAAAC

Homology of Contig U35_47029 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37040.1	723	7e-142	protein\|DUF630/DUF632 domains containing protein, putative, expressed
Brachypodium v1_2	Bradi4g36750.1	735	7e-146
Arabidopsis v10	AT1G77500.1	879	2e-52	Protein of unknown function (DUF630 and DUF632) \| chr1:29121753-29124937 FORWARD LENGTH=879