barSeed - Barley Seed Development Database

Probe CUST_18473_PI390587928

Source Contig U35_23075

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18473_PI390587928	Hv_44K_v2	GAGCCTCGAAGGTAGAAATTAATTGGTGGACATAAACCAAAAATCAGTGATGCAAGTATT	795	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63956.2	714	2e-24	190 - 249	100	60 / 60	minus	ABC49845
JLOC1	JLOC1_41945.1	1314	8e-25	462 - 521	100	60 / 60	plus
Harvest21	ABC16900	886	3e-25	796 - 855	100	60 / 60	plus
Harvest35	U35_23075	886	3e-25	796 - 855	100	60 / 60	plus

Contig Sequence (886 bp)

>U35_23075 886 Hv_44K_v2
AGCGAGAAAAAGGAGAGACAACTCCATGGCAGCCGAGGGTTCCAGCGGCGGCGGCCGGAA
AACAACGTTGCCTCATAACCCAAGAGAGCGCGGAGCGGCGAAATTCCTCACCGGCTTGCC
ATCGCGAGGAAACTTCTCCTCAAGTTCCCTATCTTCCAATCTGGGAGGCCTCAGGGTTTA
TGTCTGCGAGCACGACACAAATCCTCCAGAGGGACAAGTGATCGAGACGGATACGACAAA
TATCTTAATCAGACATCTGCAACTAAAGAAGAAAGAGAGTGAGGCCAAAGACGCAGGTTC
TAGGACTCAAGGGGAAAGTGGCAAGGCTAAAAGATGTGCTGCCAGAAGTTTGGGTGTGCA
AAAGTCGTCAAAAAAGCCCAAGTTGGGCAGTTCTTCCGGACTGCCTTCCTCTGAGGAAGC
AATATCTGGCTTTTCACAGCACACACTGCAGTCCTTCACCGTAGAGAGGTTGCGTGCACT
TCTCCGACAAAGAGGCCTCACAACCAAGGGGAAAAAGGCATATCATGCTTGAAATTTATT
CTGAATTTAAAGTTCATAGAATTAAAAATCTTAATCAATGGTATAAACATTTGAATTCTG
CTTCAAAAGAACTTAATTGAATATCAGATATATCGTGTACATTTGACATCTTGGATATTT
CTGAATATGCTCCACATGCTTGAAAATTCATTTTGTAGTGATTTCAGTGTATGCGAAGCG
ATATTTGAACGTTCTGACAAACCTACCTACTATCTAGCATGCTAGTTTATGTATTCTGCA
ATTATTAGCAGAATTGAGCCTCGAAGGTAGAAATTAATTGGTGGACATAAACCAAAAATC
AGTGATGCAAGTATTTTGTTTGCTAGAATAAAGGATGAAATATAAG

Homology of Contig U35_23075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g19110.1	176	7e-57
Arabidopsis v10	None