barSeed - Barley Seed Development Database

Probe CUST_18460_PI390587928

Source Contig U35_35059

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18460_PI390587928	Hv_44K_v2	CTTGTGGATGAGTGGAACTAGGAATATAATGTGGATGAATGGAACTATGAATAGAATGTG	417	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.763	1.652	1.191	0.747	0.254	0.379
Raw	458.496	625.418	417.382	419.125	50.020	81.190

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67513.2	2492	2e-24	1044 - 1103	100	60 / 60	plus	None
MLOC	MLOC_67513.4	1910	2e-24	376 - 435	100	60 / 60	plus	None
MLOC	MLOC_67513.3	2655	2e-24	1044 - 1103	100	60 / 60	plus	None
MLOC	MLOC_67513.1	2473	2e-24	592 - 651	100	60 / 60	plus	None
JLOC1	JLOC1_44586.1	1907	8e-25	1474 - 1533	100	60 / 60	minus
JLOC1	JLOC1_44585.1	1042	8e-25	479 - 538	100	60 / 60	plus
Harvest35	U35_35059	487	3e-25	418 - 477	100	60 / 60	plus

Contig Sequence (487 bp)

>U35_35059 487 Hv_44K_v2
TATAGGGCGAATTGGGCCCTCTCGAAGATGCTCGAGCGGCCGCTGGCTATCTGCGCATGT
ACAGGTACTACGACAGTGTGTGGACTCTCAACCTGAGAAACACGACGTTCAAGAACGAGG
AGATCGAAGTCGTCCTCCCCAAGGTGATGATCGTGGCCTGTGATATGAGACTGATTGCCG
AGCCTGAAGAACCTATTACTTGCCAGCAGTGCCAGTAGTCCAGCACCTTTAATCATACTC
CCCTTCATGATAGACCAGGCGCCACCCCAAACTAGACGGTCATCAGTATCGCTTATGGAA
TGATCCCCAGGAGCATCTAGGCGGCTTCCATTGTGCCAGAACATAATTGCTGTGAATTTG
TTAGCGTTTGCATCGCTTATGGAAGGATGATCTCGCCCTTTCGTGCCGATGACATATCTT
GTGGATGAGTGGAACTAGGAATATAATGTGGATGAATGGAACTATGAATAGAATGTGTGT
GAATTTT

Homology of Contig U35_35059 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None