barSeed - Barley Seed Development Database

Probe CUST_1845_PI390587928

Source Contig U35_17514

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1845_PI390587928	Hv_44K_v2	CATGTATTCTCTCTGCCTTCTTGGGAGTATGTTAAATGGATAAGCAATCATCTAGTATTA	565	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.994	4.531	1.131	0.967	0.405	0.619
Raw	116.422	219.184	44.926	64.945	8.093	14.956

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59127.1	1582	2e-24	154 - 213	100	60 / 60	minus	ABC07373
MLOC	AK360485	1324	9e-22	1259 - 1320	97	60 / 62	plus	ABC07373
JLOC1	JLOC1_38452.1	1502	8e-25	1381 - 1440	100	60 / 60	plus
Harvest21	ABC07373	680	3e-25	25 - 84	100	60 / 60	minus	ABC07373
Harvest21	ABC07371	649	3e-25	25 - 84	100	60 / 60	minus
Harvest35	U35_17515	1092	3e-25	1009 - 1068	100	60 / 60	plus
Harvest35	U35_17514	649	3e-25	566 - 625	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_17514 649 Hv_44K_v2
GCGACGACGGGGGACTCGTTGTTCAAGAAGCTGGACACGGTGCAGATCGAGGAGGCGACG
GGGCTGTGCCTGGCCGTGGTGGCGTCCGCGGCCACGTTCGCGTGGGTCTCCAGCGCGCGC
GGCCGGATCGGGCAGATGCTCACCCTCGGCTGCAACTCCTTCGTGGACGGGCTCATCGAC
AACGTCGTCGACGTGCTCTTCTCCGACGACCAGATGCAGGACTGGTCCGACGACGCCTGA
GCACAGCACACACACGTGTAGATATATACGATACGATACGGCTACTAGACACAGACGCTG
CATGCGCATGATGATAGTATAGAACTAATACTAGAGATCGAAATCGTAGCGTTGTTATTG
CATTTCCAAGCTCCATCGCTGCTGCGACTGCAAGTGGTTCCTTGTTTCTTCAGAGATGGA
TGCCATGGCTCTGGTGCAGAGCTCTGCTCATCTGGAGTCTCTTTGCCTTTTTCTGTGATT
GCAGCGTTGTAATCTGCATATGATGGAGCAGTACTACCTCAAGTATTAACTGTACCTAGA
GCCACTTATACTGTAAAGCTAGAACCATGTATTCTCTCTGCCTTCTTGGGAGTATGTTAA
ATGGATAAGCAATCATCTAGTATTACAGTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None