- Probe CUST_18459_PI390587928
- Source Contig U35_47030
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18459_PI390587928 | Hv_44K_v2 | CTGTTGCTTGTAATTATTCTGTTAGCCTGATATGAATCAAGTGAGGATTCGCTCTAAAAA | 12 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.615 | 2.443 | 1.545 | 0.809 | 0.236 | 0.248 |
| Raw | 1228.104 | 2960.582 | 1563.183 | 1317.447 | 132.283 | 152.212 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60497.1 | 1983 | 9e-22 | 10 - 64 | 100 | 55 / 55 | minus | ABC47807 |
| JLOC1 | JLOC1_39456.1 | 2004 | 5e-22 | 1920 - 1974 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC47807 | 551 | 3e-25 | 13 - 72 | 100 | 60 / 60 | minus | ABC47807 |
| Harvest35 | U35_47030 | 551 | 3e-25 | 13 - 72 | 100 | 60 / 60 | minus |
Contig Sequence (551 bp)
>U35_47030 551 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGAGCGAATCCTCACTTGATTCATATCAGGCTAACAGAATAAT TACAAGCAACAGATGCAGACGCAGATGCATGCCCACAAGAATGGCGACCCTACCACCCCC CAACGACGACGACCAGTCAAGCCAAGCCACCATACACACATGGTTGCTGCTACTCTACAC CCTAATTTTTAATCAGCGTCAGAGAAACATTCTAGGTTTCCAAAACCCTGGGGCAATGCA AGATGCAAACACAACTCACTCAATGTGCTAACTGAAACGGAGAAGAACACTGGTCACTGA ACTTGATACCGACGGTCGTGTCATGTCATGTCATGTCGCGTTCACCGCCGCCGGGCGCGG CTGCTGCTGCTGTTGCTCGATGGTGGCGGCCTTCTCGGCGCTGTCCCTGGGGCCGGCACG CGCCAGGAGGTCCTCGTAGAGCGTGACGGAGTCCCGGGAGAACTCGGCGAGGGCCTCGAA CATGCCGGCGAGGCCGATCTTGAAGCCGTTGAGGGTGACGTCGTGGGTGTCGCGCATGCA GTGGTGGTGCC
Homology of Contig U35_47030 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |