barSeed - Barley Seed Development Database

Probe CUST_18454_PI390587928

Source Contig U35_47037

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18454_PI390587928	Hv_44K_v2	TACGAGAGAGGCATATATGTTGCTGGCTTAAGCGAGGAAATTGTGACGTATCCTGAACAA	508	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67714.1	1176	2e-24	579 - 638	100	60 / 60	minus	None
MLOC	MLOC_67714.3	929	2e-24	322 - 381	100	60 / 60	minus	None
MLOC	AK370249	4210	7e-23	632 - 691	98	59 / 60	plus	ABC18704
JLOC1	JLOC1_44734.1	1094	8e-25	611 - 670	100	60 / 60	plus
Harvest21	ABC47816	580	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_47037	580	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_47037 580 Hv_44K_v2
GAGACCCCCAAACCCCACCGCCGGCCCGCCCCGGCGGAGTCCTTTCGACCCGCGGCGGCC
GGCGATGGACCGGATCCACGTCACCGTGCGCGCGCGGCCGCTCCATCCGGAGGACGCGCA
GAGCAGCCCGTGGCGGATCTCCGGAAACACCGTCGCGCTCACCGCCCAGCCCTCTATTCG
CTTCGAGTTCGACAGGATTTTCGGCGAGGACTGCCACACGGCCGACATCTACGGGGCCCG
CACCAAGCACATCGTCGACTCTGCCGTGCAAGGGTTCAACGGCACTGTTTTTGCATATGG
ACAAACTAACAGTGGAAAGACCTATACAATGAGAGGATCGGCTAATGAACCTGGAATAAT
ACCGCTTGCGATTCAAGATTTATTTAGAAGTATACAGCAGCATATGGATAGAGAGTTTCT
TGTCCGCATGTCTTATATGGAGATTTATAATGAAGAAATAAATGATCTTCTTGTCCCAGA
ACATCGAAAATTGCAGATTCATGAGAATTACGAGAGAGGCATATATGTTGCTGGCTTAAG
CGAGGAAATTGTGACGTATCCTGAACAAGTTNTAAATTTT

Homology of Contig U35_47037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi4g30490.2	1055	9e-101
Arabidopsis v10	AT3G10180.1	1273	2e-74	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:3146393-3154644 REVERSE LENGTH=1273