barSeed - Barley Seed Development Database

Probe CUST_18452_PI390587928

Source Contig U35_23080

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18452_PI390587928	Hv_44K_v2	TAACTTTGTGGCGGTTTGCCGGTTTCTTCAATGAAAATCGAGGAGGAGGGCTTGTTGTTT	1152	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.378	2.783	1.162	0.793	0.162	0.240
Raw	109.314	207.025	71.040	75.844	4.519	8.780

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_38842.3	1067	8e-25	889 - 948	100	60 / 60	plus
JLOC1	JLOC1_38842.2	1164	8e-25	986 - 1045	100	60 / 60	plus
JLOC1	JLOC1_38842.1	1094	8e-25	916 - 975	100	60 / 60	plus
Harvest21	ABC21520	552	3e-25	472 - 531	100	60 / 60	plus	ABC21520
Harvest35	U35_23080	1233	3e-25	1153 - 1212	100	60 / 60	plus

Contig Sequence (1233 bp)

>U35_23080 1233 Hv_44K_v2
CACGCGTCCGCTTTGTTTCAGACATCATCATATGCATACTACTCCGACGAACTGGTGAGT
AATGTCTGTGATCGTGCTGACATGACATTACATCCAGGGCGCCCTCCTGTCGGCCGCGCT
TGTTGGGCTCCAGGAACAAGGGCTGGCCTTGAACAGGGTTCCTAGGGTGAAGCACGTTGT
GATCATATCCGGTGCGAAGATCCAAGCCCCGGCATTGGCTGCCAAGGCGTACGCCAACAA
GATCAGCTGCACTTCGCTTCACTTCATTGGTGACGTCGACTTCGTGAAAGCACACGGGGA
GGAGCTGGCGGACTCGTTCGTGGATCCGCTTGTCATACGCCACCCGGCCGGGCACACGGT
CCCCAGATTCGGTAAGCGCGACTGGCCTGTGAATTTGGAAGAGAGCATTTGGGTTCATTG
CCCAACGGGACTTGGAACGTTCAGAAGGAGCAAGACAAGGTTGCTGACTGAGTTTTGCTG
GTTAATTTTTTGTTTTTTTGGTGTGCTCGGCATTTGCAGACGAGAAGGGTCTCCAAATGA
TGCTCAGCTACCTTGACAAGATTGAAAGGGATCCGGCGAGAGAATGATCAATTTTGTTGA
CCATCACTCTGTTTCATGAGTTTATGGCGTAGTGGTAGTAGCATGGATGGCTGACATTCG
AAGACCGCGATAACTGCTTAACAGAAGGCTGCGAAAAAGTATTACTCCACTACAGTAGGT
TGTTACTATCTCCATTCCAATGAATAGTAAGCGGTCGCACTTCGAGATTTAACGAAATGC
TGGAGATGGTGAGCCGATCTAGGGATCAAACATTAAGACCCAACTTTGATGCCTTGTGTA
TTATCTCAATAGCTGAGTGTAATATATACTGTATTCATTTGGCAGGAGACAGTTCTGAAG
ATCAAGAAGGTGCTGGGTGAGGCGTATACAAGGGGGCATGAGCTCCTACGGCTAGGAGGA
TCCGCTGATGTTGGGCTTTCTCTCTGCTCGAGCTCTGTTATTTTTGCGTGCTCTGGGTGT
GTAAGCTTCTGGTTTGTACTTGGGCCTGACAAGGCTGTGTTTCAAGCTGCCTACCCGCAC
TTGTTGTCTGTCTGATATGTTCCCACGCTTTGTTTTTAATTTTTCTCCTTTCTACTCTTT
AGTTTCATGTAATAACTTTGTGGCGGTTTGCCGGTTTCTTCAATGAAAATCGAGGAGGAG
GGCTTGTTGTTTCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_23080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None