barSeed - Barley Seed Development Database

Probe CUST_18450_PI390587928

Source Contig U35_23081

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18450_PI390587928	Hv_44K_v2	TTTATTATGCGAAAAGTACCTCTGCTCACTGCTTATCTGCAAGCAATTGACCCTAAAAAA	579	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.580	2.033	1.661	0.939	0.345	0.369
Raw	129.477	263.784	184.270	161.792	20.436	24.430

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC18208	650	3e-25	12 - 71	100	60 / 60	minus	ABC18208
Harvest35	U35_23081	650	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_23081 650 Hv_44K_v2
CGCACCCGAGGTCACCGACACGAGGAAATCGACGCAGTCCTCTGATGTCTACAGCTTCGG
TGTCTTTGTACTCGAACTCCTTACCGGCAAGTCACCCGTTCAGGTAACCGGCGGAGGCAA
CGAGGTCGTCCACCTTGTCAGGTGGGTGCAGTCCGTTGTCCGGGAGGAGTGGACCGCCGA
GGTATTTGACGGTGAGCTGATGAGGTACCCTAACATCGAGGAGGAGATGGTGGAGATGCT
ACAGATCGCAATGGCATGCGTTTCGAGGAACCCGGAGCGGCGGCCGAAGATGGTGGACAT
GGTGAAGATGATCGAAGAGGTCGGCAGGAATGACAGTGGAACGCGGGCTTCGACGGAGGC
CTCGACGCCGGTGGGGGAAGCTCGGAGCAAGGCAGAGAGCTCATCTGCAGCCCCCTGACG
GAGTTCGTTTTAGTACTGCTATCATTTTTTCGTCTTTGCAAGGGTAGGAGCACGGATAGT
TCTGTGTTTTGACGACGGTGTATGATTCTTTTGTCTTATGATTTACTACATGTTACGAAA
TTGTAACACCTTGCCATGTGGAACTACTGAAATTGTTTGTTTATTATGCGAAAAGTACCT
CTGCTCACTGCTTATCTGCAAGCAATTGACCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g12390.1	642	5e-66	protein\|inactive receptor kinase At2g26730 precursor, putative, expressed
Brachypodium v1_2	Bradi2g07330.1	638	2e-72
Arabidopsis v10	None