barSeed - Barley Seed Development Database

Probe CUST_18446_PI390587928

Source Contig U35_23086

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18446_PI390587928	Hv_44K_v2	GGAATGTGATCGTCTTTCTCTGTGGTATGAATGGAAATTGGTACTGTAGTTATATAGAAA	709	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.783	3.279	1.258	0.957	0.259	0.325
Raw	87.371	175.117	52.928	68.912	5.135	8.069

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57918.1	957	9e-22	5 - 62	98	57 / 58	minus	ABC19130 ABC44438
JLOC1	JLOC1_37610.1	2136	5e-22	892 - 949	98	57 / 58	plus
Harvest21	ABC19130	783	3e-25	710 - 769	100	60 / 60	plus	ABC19130
Harvest35	U35_23086	783	3e-25	710 - 769	100	60 / 60	plus

Contig Sequence (783 bp)

>U35_23086 783 Hv_44K_v2
CAGGAGCATCGACCGACGAGCGGCGCTACCAACCTCGTCCCTTGGATTCATGGGCATCTC
GGAAAACAAGGCTGCATCCCTGCTGGATCCGGAGACCGTGGGCAAGAAGACGCCTCGTCC
GGATCATGTCCGCGCCTTGGCGCTCTTCACCGTCGGCGTCACCGCCTTCTCCTTGGCGGT
GGGCTACTCAATCGCACACGCACACGCACTCGACCACTTCCACGTCCCCTGCTGGGAGTT
CTCCTTTCTGCCTTGTGACCACCTGACGGACAGGGACGAAGTCGCGGTGAACGCCATCTG
GCTCGGGCTGTTGTCCTGCGTCGCGCTCATGGCGGCCGGGGCGGTGCTTATCCCGTGCGG
CCGTCGCTGGGTCAACCGCGCCCTCGTCTGCCTCGGGCTCGCGCTCGCCACCGCCGGCAA
CTGCTTGTACGCCACCGCAGCCTGCATGTTCCTCGTCGCCCACCTAGGAGACCTCTTCAG
CCGGATCCTCTGTATTGTGGGCATCTTCGCGTACGCGCTAGGGCTTCCTGGACCTCCTTC
TATGGAGTGAGAAGCAAGGCAAGCACTAGCTGGCGAGCATCTGTTCATGAGGTACTCTAA
TGACCGACTCATCAAGTGATGACTAGGAAGTTCTAAGGAATAATAATAATTAATCCAAAC
TACATGGATATTATGCTAGTTGTTAGTACATTTGTGTACCCTGGAACCTGGAATGTGATC
GTCTTTCTCTGTGGTATGAATGGAAATTGGTACTGTAGTTATATAGAAAAAAAAAAAAAA
AAA

Homology of Contig U35_23086 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None