barSeed - Barley Seed Development Database

Probe CUST_18445_PI390587928

Source Contig U35_23087

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18445_PI390587928	Hv_44K_v2	TCTCGTTGTTCAAGCTAGATGAAATCGATGCTTGTCGTATTCTATTGTTTGATAGGCATT	553	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18966.1	2301	2e-24	313 - 372	100	60 / 60	minus	ABC17329
JLOC1	JLOC1_13140.1	2272	8e-25	284 - 343	100	60 / 60	minus
Harvest21	ABC17329	735	3e-25	554 - 613	100	60 / 60	plus	ABC17329
Harvest35	U35_23087	735	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (735 bp)

>U35_23087 735 Hv_44K_v2
AGACTGCAAAGCTTCACTGGTCATTTGCGTTGGCAGACAAGGTTGACCTGTCTACCTGGG
ATTCTTCAGAAACATTAAAGCTTTTTGATAGTGCTGAGGAGAAGATGAGGGCTGCAACAG
AGATGTGGGAGAAAGTGGAAGAACAGAGAATGCTAGAGTTAAAAACACCTGGTGCGACCG
AGAAGGATGAGGTGTTGAAGAAAAGAAAGAAGCAACACAGTGCAGATGGTCAAGGGGAGT
TGACACCAGAAGAGGCAGCTGAACAGGCAGCTGTAATGAGGCAACAGATTCACCTATTTT
GGGGCAATATGCTTTTTGAGCGCTCTCAAGTGGAATTCAAGCTTGTTGTCGGTGATTGGA
AGAAGAACCTCGATGCTTCTGTTGAAAGGTTTAAGTTGGCTGGAGCTTCAGAATCAGATA
TCTCCACGGTGCTGAAGAATCATTTTTCCAATGCAGTCTCTGAGTCCGAAGAGAAGAAAG
TTATGCCTTCAGGCACAGGAAGTTCCCAAACAAGTGACAACATTGATGATGAATCTGTGG
TTGAAAGCTAAGTTCTCGTTGTTCAAGCTAGATGAAATCGATGCTTGTCGTATTCTATTG
TTTGATAGGCATTATTTGTTTTTGATAACTTCTTCATGGTTTGGTATCATGACTGCCAAT
TTAGATATTATTAGCATACTAAATTTTTTGATTTGCAGAACNTAGTGTGACNTTCACATG
CTTCGAAAATCTTAT

Homology of Contig U35_23087 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04990.1	788	2e-91	protein\|cytoskeletal protein, putative, expressed
Brachypodium v1_2	Bradi1g33010.1	782	2e-103
Arabidopsis v10	AT1G62390.1	751	4e-63	\| Symbols: Phox2 \| Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein \| chr1:23084632-23086887 REVERSE LENGTH=751