barSeed - Barley Seed Development Database

Probe CUST_18443_PI390587928

Source Contig U35_23089

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18443_PI390587928	Hv_44K_v2	TATTGCAGTTGCCCACATACTACATCTTTCGGCAGCAGAAAAGCTTAGATGTTCATGGGC	1111	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251516.1	1828	2e-23	1441 - 1498	100	58 / 58	minus	ABC18266
MLOC	MLOC_21331.3	1350	2e-23	945 - 1002	100	58 / 58	minus	ABC18266
MLOC	MLOC_21331.2	1041	2e-23	636 - 693	100	58 / 58	minus	ABC18266
JLOC1	JLOC1_14806.1	1054	1e-23	628 - 685	100	58 / 58	minus
Harvest35	U35_23089	1282	3e-25	1112 - 1171	100	60 / 60	plus

Contig Sequence (1282 bp)

>U35_23089 1282 Hv_44K_v2
GGAAAAGCATATTGACCCTTATGCTGAAGCAGCCATGAGTGAGTACCCTCTCTTCTTTGA
GCTCATTCCCCAGAGACCACATTACAAAGGGTTAGTGAACACCAGTGACACTATACGAGA
TCTGGCCTGTAGAGGACTGTGGTTCTTATTGGTTGGTCTGGCTAGGGAGGTACTCAAGAC
ATCCTGTGATACAGAAGCTTTAGAGGTTGCACATTTGATGAAAAAAGCTCGGCAACTGGA
AAGAAATGGGTTCAATGTGAAGCATTTCGTTGCCCGTCTGAAGGAGCCACAGACCCGACT
CAGAAAGCTTGAGGACTCCAGGGCAAGGCTCGAGGATGCCCGGACCAAAGAGCAAGAACC
AAAAGGTGTTAAATCACTTTCAACCCATCTGAGTAATCTGAAACACAATGTACTAACAAT
GCAGAGGCACTTGGAGGGGAACAAGCAAGCTCGTAGTGCATCTGTGCGTGATGAGTCGAG
CGAAGGAATCGATCTGGCCAGCCTGGAGAAGGAAGTAGAAGCTGCAGAAAAATACTGTCA
GGCGATGAAGGATGAAGTGGCTGTGATGAGACTGAAATACGCTGATCTTTGACGCTTTCT
TGGTCTGTACATACTAAATAGTAGTCGATGGATTCACAGTATGCACCTGGTAGCTGATCC
TCTGAACCTGATCCAGATTTTGATTATGAGGTTCAGGCTCCAGTGGAACTTTGGAAAGGT
GTCGTACTGAAACACAACCCCTGTAACGTTGAATTGGCTGAAGCATGTTTCTTGTTTTTG
CTCCTGCAATAGGGCCATTGTGTTAGTGGAACTGATACTTTATTAGAGCAGCGGCCGCTA
TAGGAGTCTGGAGAGTAACTCCGTTGCATTCTACATCTCGGACTTTAAAAATCAGCACAT
GAATAATTGCTACTATCTACTATCAATGGCAAAGTATCAGTTGAGCTGGCACTGAGCAGG
CCTCAAAACTAATTTAGTCAATCACAAGATGAGCAGGCCTCAAAACTAATTTAGTCAATT
ACAAGAATAAACATCCCCAGATAGCAAGGTGCATCTAACTGTTGCCCACATACTGCATCT
TTCGGCAGCACAAAGCTTAGCTCAGGCAGCATATTGCAGTTGCCCACATACTACATCTTT
CGGCAGCAGAAAAGCTTAGATGTTCATGGGCATTTCCTCTGGATATAAGAAACGCCATGC
TCCTCGTACTCTGCTTTGGGGAACCACATTTGCTGGAGCGACCAGCGGCCGCTCGAGCAT
CTTCTGGAAGGCCCAATTCGCC

Homology of Contig U35_23089 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g11820.1	863	4e-70	protein\|expressed protein
Brachypodium v1_2	Bradi3g22990.1	859	2e-93
Arabidopsis v10	None